Data DOI: 10.15785/SBGRID/568 | ID: 568
Publication DOI: 10.1126/sciadv.aat0979
6CS9 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Kvansakul Laboratory, La Trobe University
Release Date: 27 Jul 2018
1. If this dataset is locally available, it should be accessable at /programs/datagrid/568
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/568 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/568 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/568 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/568 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 568 ; shasum -c files.sha'
Storage requirements: 3.7G
Biological Sample:
Human beta-defensin 2
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
Australian Synchrotron - MX2
Data Creation Date:
20 Jul 2016
Related Datasets:
None
Jarva, M; Hulett, M; Lay, FT; Phan, T; Kvansakul, M. 2018. "X-Ray Diffraction data for: Human beta-defensin 2. PDB Code 6CS9", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/568.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Michael Jarva | Data Collector, Depositor | La Trobe University |
| Mark Hulett | La Trobe University | |
| Fung T Lay | La Trobe University | |
| Thanh Kha Phan | La Trobe University | |
| Marc Kvansakul | Data Collector, PI | La Trobe University |
Processed in XDS and merged in aimless.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9537
Sweep:
SWEEP1
Files:
/programs/datagrid/568/HBD2D7_2_1_###.img
Images:
1 - 210
Beam:
(158.81, 157.73) -> (158.81, 157.74)
Distance:
300.02 -> 300.93
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.8 | 4.83 | 1.8 |
| Low resolution limit | 14.3 | 14.3 | 1.83 |
| Completeness | 96.1 | 99.4 | 67.4 |
| Multiplicity | 3.9 | 3.7 | 2.6 |
| I/sigma | 10.3 | 28.1 | 0.8 |
| Rmerge | 0.061 | 0.028 | 1.331 |
| CC half | 0.998 | 0.999 | 0.264 |
| Anomalous completeness | 94.0 | 94.3 | 65.4 |
| Anomalous multiplicity | 2.1 | 2.1 | 2.1 |
| Cell | 32.87 | 25.54 | 40.17 | 90.0 | 98.64 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9537
Sweep:
SWEEP1
Files:
/programs/datagrid/568/HBD2D7_2_1_###.img
Images:
1 - 210
Beam:
(158.81, 157.73) -> (158.81, 157.75)
Distance:
300.02 -> 299.98
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.8 | 4.88 | 1.8 |
| Low resolution limit | 32.5 | 32.5 | 1.83 |
| Completeness | 96.2 | 99.7 | 67.7 |
| Multiplicity | 3.9 | 3.7 | 2.6 |
| I/sigma | 10.3 | 27.7 | 0.8 |
| Rmerge | 0.061 | 0.029 | 1.274 |
| CC half | 0.998 | 0.999 | 0.263 |
| Anomalous completeness | 94.1 | 95.0 | 66.0 |
| Anomalous multiplicity | 2.1 | 2.1 | 2.1 |
| Cell | 32.87 | 25.53 | 40.16 | 90.0 | 98.64 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9537
Sweep:
SWEEP1
Files:
/programs/datagrid/568/HBD2D7_2_1_###.img
Images:
1 - 210
Beam:
(158.81, 157.73) -> (158.81, 157.75)
Distance:
300.02 -> 300.11
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.2 | 5.97 | 2.2 |
| Low resolution limit | 39.76 | 39.76 | 2.24 |
| Completeness | 100.0 | 100.0 | 99.4 |
| Multiplicity | 4.1 | 3.9 | 3.9 |
| I/sigma | 12.9 | 24.5 | 17.6 |
| Rmerge | 0.286 | 0.068 | 0.552 |
| CC half | 0.645 | 0.993 | 0.12 |
| Anomalous completeness | 99.8 | 100.0 | 99.3 |
| Anomalous multiplicity | 2.2 | 2.2 | 2.2 |
| Cell | 32.9 | 25.56 | 40.208 | 90.0 | 98.586 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
