Data DOI: 10.15785/SBGRID/565 | ID: 565
6CDD Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Rapoport Laboratory, Harvard Medical School
Release Date: 19 Jun 2018
1. If this dataset is locally available, it should be accessable at /programs/datagrid/565
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/565 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/565 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/565 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/565 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 565 ; shasum -c files.sha'
Storage requirements: 8.8G
Biological Sample:
Npl4 zinc finger and MPN domains (Chaetomium thermophilum)
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Beamline 24-ID-C, NE-CAT, APS, Chicago, IL
Data Creation Date:
16 Aug 2017
Related Datasets:
None
Bodnar, N; Rapoport, T. 2018. "X-Ray Diffraction data for: Npl4 zinc finger and MPN domains (Chaetomium thermophilum). PDB Code 6CDD", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/565.
Zn peak dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Nicholas Bodnar | Data Collector, Depositor | HMS |
| Tom Rapoport | PI | Harvard Medical School |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.2827
Sweep:
SWEEP1
Files:
/programs/datagrid/565/nb2_1peak_1_####.cbf
Images:
1 - 1500
Beam:
(216.8, 223.02) -> (216.8, 222.95)
Distance:
350.0 -> 350.09
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.51 | 6.81 | 2.51 |
| Low resolution limit | 57.83 | 57.85 | 2.55 |
| Completeness | 98.5 | 98.6 | 98.5 |
| Multiplicity | 5.6 | 5.4 | 5.8 |
| I/sigma | 11.5 | 33.0 | 0.6 |
| Rmerge | 0.069 | 0.03 | 3.544 |
| CC half | 0.998 | 0.999 | 0.342 |
| Anomalous completeness | 96.0 | 94.6 | 97.1 |
| Anomalous multiplicity | 2.9 | 2.9 | 2.9 |
| Cell | 58.85 | 72.22 | 193.53 | 90.0 | 96.71 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.2827
Sweep:
SWEEP1
Files:
/programs/datagrid/565/nb2_1peak_1_####.cbf
Images:
1 - 1500
Beam:
(216.8, 223.02) -> (216.8, 222.96)
Distance:
350.0 -> 349.99
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.51 | 6.81 | 2.51 |
| Low resolution limit | 96.1 | 96.17 | 2.55 |
| Completeness | 98.5 | 98.6 | 98.5 |
| Multiplicity | 5.6 | 5.4 | 5.8 |
| I/sigma | 11.5 | 32.9 | 0.6 |
| Rmerge | 0.069 | 0.03 | 3.539 |
| CC half | 0.999 | 0.999 | 0.332 |
| Anomalous completeness | 96.1 | 94.7 | 97.1 |
| Anomalous multiplicity | 2.9 | 2.9 | 2.9 |
| Cell | 58.85 | 72.22 | 193.53 | 90.0 | 96.71 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.2827
Sweep:
SWEEP1
Files:
/programs/datagrid/565/nb2_1peak_1_####.cbf
Images:
1 - 1500
Beam:
(216.8, 223.02) -> (216.8, 222.96)
Distance:
350.0 -> 349.82
Spacegroup:
P 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.42 | 6.58 | 2.42 |
| Low resolution limit | 192.32 | 192.93 | 2.47 |
| Completeness | 98.4 | 98.4 | 97.8 |
| Multiplicity | 5.7 | 5.7 | 5.8 |
| I/sigma | 9.2 | 48.9 | 0.2 |
| Rmerge | 0.083 | 0.036 | 2.915 |
| CC half | 0.996 | 0.999 | 0.304 |
| Anomalous completeness | 97.0 | 96.6 | 94.6 |
| Anomalous multiplicity | 2.9 | 2.9 | 2.9 |
| Cell | 58.916 | 72.298 | 193.654 | 90.0 | 96.726 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
