X-Ray Diffraction data from Npl4 zinc finger and MPN domains (Chaetomium thermophilum), source of 6CDD structure

Data DOI: 10.15785/SBGRID/565 | ID: 565

6CDD Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Rapoport Laboratory, Harvard Medical School

Release Date: 19 Jun 2018

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/565

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/565 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/565 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/565 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/565 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 565 ; shasum -c files.sha'

Storage requirements: 8.8G

Biological Sample:

Npl4 zinc finger and MPN domains (Chaetomium thermophilum)

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Beamline 24-ID-C, NE-CAT, APS, Chicago, IL

Data Creation Date:

16 Aug 2017

Related Datasets:

None


Cite this Dataset

Bodnar, N; Rapoport, T. 2018. "X-Ray Diffraction data for: Npl4 zinc finger and MPN domains (Chaetomium thermophilum). PDB Code 6CDD", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/565.

Download Citation

Dataset Description

Zn peak dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Nicholas BodnarData Collector, DepositorHMS
Tom RapoportPIHarvard Medical School

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.2827

Sweep:

SWEEP1

Files:

/programs/datagrid/565/nb2_1peak_1_####.cbf

Images:

1 - 1500

Beam:

(216.8, 223.02) -> (216.8, 223.12)

Distance:

350.0 -> 350.18

Spacegroup:

P 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.62 7.11 2.62
Low resolution limit 67.58 67.61 2.67
Completeness 94.5 96.1 87.3
Multiplicity 5.0 5.3 4.5
I/sigma 9.8 25.3 1.2
Rmerge 0.087 0.038 1.205
CC half 0.996 0.998 0.463
Anomalous completeness 88.6 91.0 78.1
Anomalous multiplicity 2.6 2.6 2.6
Cell 58.895 72.204 193.365 90.0 96.748 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.2827

Sweep:

SWEEP1

Files:

/programs/datagrid/565/nb2_1peak_1_####.cbf

Images:

1 - 1500

Beam:

(216.8, 223.02) -> (216.8, 222.95)

Distance:

350.0 -> 349.91

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.67 7.24 2.67
Low resolution limit 57.83 57.84 2.72
Completeness 98.5 98.4 98.0
Multiplicity 5.6 5.3 5.2
I/sigma 13.6 33.8 1.1
Rmerge 0.061 0.029 1.506
CC half 0.964 0.934 0.507
Anomalous completeness 95.7 94.2 95.0
Anomalous multiplicity 2.9 2.9 2.9
Cell 58.85 72.22 193.54 90.0 96.71 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.2827

Sweep:

SWEEP1

Files:

/programs/datagrid/565/nb2_1peak_1_####.cbf

Images:

1 - 1500

Beam:

(216.8, 223.02) -> (216.8, 222.95)

Distance:

350.0 -> 349.98

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.66 7.22 2.66
Low resolution limit 96.11 96.17 2.71
Completeness 98.5 98.4 97.1
Multiplicity 5.6 5.3 5.2
I/sigma 13.5 33.7 1.0
Rmerge 0.061 0.029 1.536
CC half 0.973 0.96 0.52
Anomalous completeness 95.7 94.2 94.4
Anomalous multiplicity 2.9 2.9 2.9
Cell 58.85 72.22 193.54 90.0 96.71 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.2827

Sweep:

SWEEP1

Files:

/programs/datagrid/565/nb2_1peak_1_####.cbf

Images:

1 - 1500

Beam:

(216.8, 223.02) -> (216.8, 222.96)

Distance:

350.0 -> 349.85

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.56 6.94 2.56
Low resolution limit 67.69 67.72 2.6
Completeness 97.9 97.8 95.2
Multiplicity 5.5 5.6 5.5
I/sigma 11.3 29.0 1.5
Rmerge 0.079 0.034 0.697
CC half 0.998 0.998 0.514
Anomalous completeness 96.1 95.6 93.8
Anomalous multiplicity 2.9 2.9 2.9
Cell 58.929 72.318 193.68 90.0 96.712 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.