X-Ray Diffraction data from Protein, source of 6CDS structure

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Data DOI: 10.15785/SBGRID/557 | ID: 557

Publication DOI: 10.1038/s41467-018-03648-4

6CDS Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Tina Laboratory, The Scripps Research Institute

Release Date: 28 Sep 2018

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/557

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/557 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/557 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/557 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/557 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 557 ; shasum -c files.sha'

Storage requirements: 7.3G

Biological Sample:

Protein

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

22ID APS, Chicago, IL

Data Creation Date:

6 Jun 2015

Related Datasets:

None


Cite this Dataset

Chinthalapudi, K; Izard, T. 2018. "X-Ray Diffraction data for: Protein. PDB Code 6CDS", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/557.

Download Citation

Dataset Description

Native datasets

Project Members

Name Additional Roles Affiliation While Working on the Project
Krishna ChinthalapudiData Collector, DepositorDepositor
Tina IzardPrincipal Investigator
Tina IzardPIThe Scripps Research Institute

Reprocessing Instructions

Two datasets (1st dataset 360 frames and the second one is 153) need to be merged for processing. Beam centre="1507 1496". AutoProc used for data processing. Space group is P 1 21 1

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//557/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//557/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//557/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.