X-Ray Diffraction data from Co-crystal structure of Rap1 in complex with KRIT1, source of 4DXA structure

dataset logo thumbnail
Visualize in 3D >>

Data DOI: 10.15785/SBGRID/556 | ID: 556

Publication DOI: 10.1074/jbc.M112.361295

4DXA Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Boggon Laboratory, Yale University School of Medicine

Release Date: 26 Jan 2018

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/556

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/556 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/556 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/556 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/556 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 556 ; shasum -c files.sha'

Storage requirements: 2.2G

Biological Sample:

Co-crystal structure of Rap1 in complex with KRIT1

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24-ID-C NE-CAT

Data Creation Date:

16 Feb 2012

Related Datasets:

None


Cite this Dataset

Li, X; Boggon, TJ. 2018. "X-Ray Diffraction data for: Co-crystal structure of Rap1 in complex with KRIT1. PDB Code 4DXA", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/556.

Download Citation

Dataset Description

Native

Project Members

Name Additional Roles Affiliation While Working on the Project
Xiaofeng LiData CollectorYale University School of Medicine
Titus J BoggonDepositor, PIYale University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d mosflm_beam_centre=217.61,219.24 /programs/datagrid//556/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii mosflm_beam_centre=217.61,219.24 /programs/datagrid//556/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials mosflm_beam_centre=217.61,219.24 /programs/datagrid//556/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.