X-Ray Diffraction data from ICAP1 in complex with integrin beta 1 cytoplasmic tail, source of 4DX9 structure

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Data DOI: 10.15785/SBGRID/550 | ID: 550

Publication DOI: 10.1016/j.molcel.2012.12.005

4DX9 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Boggon Laboratory, Yale University School of Medicine

Release Date: 23 Jan 2018

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/550

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/550 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/550 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/550 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/550 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 550 ; shasum -c files.sha'

Storage requirements: 12G

Biological Sample:

ICAP1 in complex with integrin beta 1 cytoplasmic tail

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

NSLS X25

Data Creation Date:

2 Dec 2011

Related Datasets:

None


Cite this Dataset

Liu, W; Boggon, TJ. 2018. "X-Ray Diffraction data for: ICAP1 in complex with integrin beta 1 cytoplasmic tail. PDB Code 4DX9", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/550.

Download Citation

Dataset Description

Se SAD

Project Members

Name Additional Roles Affiliation While Working on the Project
Weizhi LiuData CollectorYale University School of Medicine
Titus J BoggonDepositor, PIYale University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//550/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//550/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9755

Sweep:

SWEEP2

Files:

/programs/datagrid/550/red4p2-se-wz_2_####.img

Images:

721 - 1440

Beam:

(136.0, 135.2) -> (136.0, 135.17)

Distance:

350.0 -> 350.53

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.43 6.59 2.43
Low resolution limit 45.08 45.09 2.47
Completeness 98.9 100.0 88.7
Multiplicity 50.6 51.2 16.1
I/sigma 13.4 44.6 0.9
Rmerge 0.373 0.081 3.432
CC half 0.998 1.0 0.284
Anomalous completeness 98.9 99.8 89.2
Anomalous multiplicity 26.4 26.4 26.4
Cell 135.24 231.78 75.63 90.0 90.0 90.0
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//550/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.