Limited Operations 2024/02/27 7AM ET - 10AM ET

The SBDB will be operating at a reduced level between 7AM and 10AM 2024/02/27 due to underlying system maintance. New dataset registrations, dataset depositions, downloads of published datasets from HMS, deposition credential requests, and other inquiries will be unavailable during this maintance.

X-Ray Diffraction data from Co-crystal structure of ICAP1 PTB domain in complex with a KRIT1 peptide, source of 4JIF structure

Data DOI: 10.15785/SBGRID/548 | ID: 548

Publication DOI: 10.1107/S1744309113010762

4JIF Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Boggon Laboratory, Yale University School of Medicine

Release Date: Jan. 23, 2018

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/548

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/548 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/548 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/548 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/548 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 548 ; shasum -c files.sha'

Storage requirements: 3.2G

Biological Sample:

Co-crystal structure of ICAP1 PTB domain in complex with a KRIT1 peptide

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

NSLS X29

Data Creation Date:

March 2, 2012

Related Datasets:

None


Cite this Dataset

Liu, W; Boggon, TJ. 2018. "X-Ray Diffraction data for: Co-crystal structure of ICAP1 PTB domain in complex with a KRIT1 peptide. PDB Code 4JIF", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/548.

Download Citation

Dataset Description

Native

Project Members

Name Additional Roles Affiliation While Working on the Project
Weizhi LiuData CollectorYale University School of Medicine
Titus J BoggonDepositor, PIYale University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.075

Sweep:

SWEEP1

Files:

/programs/datagrid/548/WZ_G4_1_###.img

Images:

1 - 180

Beam:

(158.1, 156.5) -> (158.1, 157.04)

Distance:

200.0 -> 201.24

Spacegroup:

P 63 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.59 4.31 1.59
Low resolution limit 40.51 40.52 1.62
Completeness 100.0 99.3 99.1
Multiplicity 19.9 17.9 14.3
I/sigma 17.0 55.9 0.8
Rmerge 0.088 0.039 3.598
CC half 0.999 0.999 0.36
Anomalous completeness 99.9 99.3 99.5
Anomalous multiplicity 10.8 10.8 10.8
Cell 81.02 81.02 89.51 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.075

Sweep:

SWEEP1

Files:

/programs/datagrid/548/WZ_G4_1_###.img

Images:

1 - 180

Beam:

(158.1, 156.5) -> (158.1, 157.05)

Distance:

200.0 -> 201.1

Spacegroup:

P 63 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.59 4.31 1.59
Low resolution limit 44.76 44.77 1.62
Completeness 100.0 99.3 99.1
Multiplicity 19.9 17.9 14.3
I/sigma 16.9 55.7 0.8
Rmerge 0.088 0.039 3.601
CC half 0.999 0.999 0.351
Anomalous completeness 99.9 99.3 99.6
Anomalous multiplicity 10.8 10.8 10.8
Cell 81.02 81.02 89.51 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.075

Sweep:

SWEEP1

Files:

/programs/datagrid/548/WZ_G4_1_###.img

Images:

1 - 180

Beam:

(158.1, 156.5) -> (158.1, 157.03)

Distance:

200.0 -> 201.19

Spacegroup:

P 61 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.54 4.18 1.54
Low resolution limit 55.27 55.3 1.57
Completeness 99.7 100.0 93.3
Multiplicity 19.6 19.3 11.0
I/sigma 13.0 41.9 0.9
Rmerge 0.162 0.069 1.774
CC half 0.997 0.996 0.242
Anomalous completeness 99.6 100.0 94.3
Anomalous multiplicity 10.6 10.6 10.6
Cell 81.109 81.109 89.546 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.