Data DOI: 10.15785/SBGRID/544 | ID: 544
6fj6 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
McCarthy Laboratory, EMBL - Grenoble
Release Date: Jan. 23, 2018
1. If this dataset is locally available, it should be accessable at /programs/datagrid/544
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/544 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/544 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/544 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/544 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 544 ; shasum -c files.sha'
Storage requirements: 8.5G
Biological Sample:
Thaumatococcus daniellii thaumatin
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
ID30B at the ESRF
Data Creation Date:
June 15, 2017
Related Datasets:
None
McCarthy, AA. 2018. "X-Ray Diffraction data for: Thaumatococcus daniellii thaumatin. PDB Code 6fj6", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/544.
Thaumatin dataset at 100K
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Andrew A McCarthy | Data Collector, Depositor | EMBL-Grenoble |
| Andrew McCarthy | PI | EMBL - Grenoble |
none
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/544/Thau_x1_w1_1_####.cbf
Images:
1 - 1460
Beam:
(223.89, 210.65) -> (223.89, 211.22)
Distance:
194.21 -> 194.29
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.15 | 3.12 | 1.15 |
| Low resolution limit | 39.55 | 39.57 | 1.17 |
| Completeness | 99.3 | 99.2 | 96.8 |
| Multiplicity | 4.6 | 4.8 | 2.8 |
| I/sigma | 10.7 | 27.1 | 1.1 |
| Rmerge | 0.057 | 0.051 | 0.783 |
| CC half | 0.996 | 0.994 | 0.491 |
| Anomalous completeness | 91.9 | 93.1 | 76.0 |
| Anomalous multiplicity | 2.5 | 2.5 | 2.5 |
| Cell | 57.96 | 57.96 | 150.74 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/544/Thau_x1_w1_1_####.cbf
Images:
1 - 1460
Beam:
(223.89, 210.65) -> (223.89, 211.2)
Distance:
194.21 -> 194.44
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.16 | 3.15 | 1.16 |
| Low resolution limit | 39.55 | 39.57 | 1.18 |
| Completeness | 99.1 | 99.2 | 97.4 |
| Multiplicity | 4.7 | 4.8 | 3.1 |
| I/sigma | 10.9 | 27.1 | 1.1 |
| Rmerge | 0.057 | 0.051 | 0.819 |
| CC half | 0.996 | 0.993 | 0.448 |
| Anomalous completeness | 92.3 | 93.0 | 82.1 |
| Anomalous multiplicity | 2.5 | 2.5 | 2.5 |
| Cell | 57.96 | 57.96 | 150.75 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/544/Thau_x1_w1_1_####.cbf
Images:
1 - 1460
Beam:
(223.89, 210.65) -> (223.89, 211.2)
Distance:
194.21 -> 194.55
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.12 | 3.04 | 1.12 |
| Low resolution limit | 75.35 | 75.52 | 1.14 |
| Completeness | 99.0 | 99.8 | 87.4 |
| Multiplicity | 4.6 | 4.9 | 2.3 |
| I/sigma | 7.0 | 14.8 | 1.0 |
| Rmerge | 0.059 | 0.053 | 0.674 |
| CC half | 0.993 | 0.988 | 0.566 |
| Anomalous completeness | 93.1 | 94.5 | 57.3 |
| Anomalous multiplicity | 2.5 | 2.5 | 2.5 |
| Cell | 57.932 | 57.932 | 150.693 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
