Data DOI: 10.15785/SBGRID/544 | ID: 544
6fj6 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
McCarthy Laboratory, EMBL - Grenoble
Release Date: 23 Jan 2018
1. If this dataset is locally available, it should be accessable at /programs/datagrid/544
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/544 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/544 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/544 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/544 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 544 ; shasum -c files.sha'
Storage requirements: 8.5G
Biological Sample:
Thaumatococcus daniellii thaumatin
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
ID30B at the ESRF
Data Creation Date:
15 Jun 2017
Related Datasets:
None
McCarthy, AA. 2018. "X-Ray Diffraction data for: Thaumatococcus daniellii thaumatin. PDB Code 6fj6", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/544.
Thaumatin dataset at 100K
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Andrew A McCarthy | Data Collector, Depositor | EMBL-Grenoble |
| Andrew McCarthy | PI | EMBL - Grenoble |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/544/Thau_x1_w1_1_####.cbf
Images:
1 - 1460
Beam:
(223.89, 210.65) -> (223.89, 211.21)
Distance:
194.21 -> 194.34
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.1 | 2.99 | 1.1 |
| Low resolution limit | 37.69 | 37.71 | 1.12 |
| Completeness | 97.9 | 99.3 | 82.2 |
| Multiplicity | 4.4 | 4.9 | 2.0 |
| I/sigma | 9.9 | 26.6 | 0.6 |
| Rmerge | 0.059 | 0.05 | 0.898 |
| CC half | 0.996 | 0.994 | 0.312 |
| Anomalous completeness | 86.5 | 93.4 | 46.0 |
| Anomalous multiplicity | 2.4 | 2.4 | 2.4 |
| Cell | 57.96 | 57.96 | 150.75 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/544/Thau_x1_w1_1_####.cbf
Images:
1 - 1460
Beam:
(223.89, 210.65) -> (223.89, 211.2)
Distance:
194.21 -> 194.42
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.1 | 2.99 | 1.1 |
| Low resolution limit | 37.69 | 37.71 | 1.12 |
| Completeness | 97.9 | 99.3 | 82.2 |
| Multiplicity | 4.4 | 4.9 | 2.0 |
| I/sigma | 9.8 | 26.7 | 0.6 |
| Rmerge | 0.059 | 0.05 | 0.918 |
| CC half | 0.996 | 0.994 | 0.312 |
| Anomalous completeness | 86.8 | 93.3 | 46.3 |
| Anomalous multiplicity | 2.5 | 2.5 | 2.5 |
| Cell | 57.96 | 57.96 | 150.75 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/544/Thau_x1_w1_1_####.cbf
Images:
1 - 1460
Beam:
(223.89, 210.65) -> (223.89, 211.21)
Distance:
194.21 -> 194.56
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.08 | 2.93 | 1.08 |
| Low resolution limit | 150.7 | 152.19 | 1.1 |
| Completeness | 97.2 | 100.0 | 74.4 |
| Multiplicity | 4.5 | 5.0 | 1.7 |
| I/sigma | 8.2 | 34.8 | 0.3 |
| Rmerge | 0.067 | 0.057 | 1.104 |
| CC half | 0.986 | 0.98 | 0.308 |
| Anomalous completeness | 89.0 | 96.6 | 33.9 |
| Anomalous multiplicity | 2.5 | 2.5 | 2.5 |
| Cell | 57.935 | 57.935 | 150.698 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
