Data DOI: 10.15785/SBGRID/535 | ID: 535
Publication DOI: 10.1038/s41467-017-01708-9
5WB0 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
McLellan Laboratory, University of Texas at Austin
Release Date: 9 Jan 2018
1. If this dataset is locally available, it should be accessable at /programs/datagrid/535
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/535 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/535 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/535 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/535 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 535 ; shasum -c files.sha'
Storage requirements: 4.3G
Biological Sample:
Human metapneumovirus fusion glycoprotein stabilized in the prefusion state
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
AMX 17-ID-1 beamline (NSLS II, Brookhaven National Laboratory)
Data Creation Date:
7 Apr 2017
Related Datasets:
None
Battles, MB; McLellan, J. 2018. "X-Ray Diffraction data for: Human metapneumovirus fusion glycoprotein stabilized in the prefusion state. PDB Code 5WB0", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/535.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Michael B Battles | Data Collector, Depositor | Geisel School of Medicine at Dartmouth |
| Jason McLellan | PI | University of Texas at Austin |
1) Convert image files using eiger2cbf 2) Beam center is: x beam 115.54 y beam 113.38 3) Use 440 frames (11-450) 4) Indexed in space group I2(1)3 5) Molecular replacement with a hybrid search model consisting of domain II of the post-fusion hMPV F structure (PDB ID: 5L1X) and a high-resolution structure of pre-fusion hRSV F (PDB ID: 5C69)
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.91977
Sweep:
SWEEP1
Files:
/programs/datagrid/535/out######.cbf
Images:
1 - 450
Beam:
(116.62, 113.17) -> (116.62, 113.24)
Distance:
300.0 -> 300.35
Spacegroup:
I 2 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.53 | 6.86 | 2.53 |
| Low resolution limit | 47.59 | 47.6 | 2.57 |
| Completeness | 100.0 | 99.8 | 100.0 |
| Multiplicity | 10.5 | 9.8 | 10.9 |
| I/sigma | 12.7 | 41.8 | 0.9 |
| Rmerge | 0.135 | 0.039 | 2.625 |
| CC half | 0.999 | 0.999 | 0.297 |
| Anomalous completeness | 100.0 | 100.0 | 99.9 |
| Anomalous multiplicity | 5.4 | 5.4 | 5.4 |
| Cell | 178.06 | 178.06 | 178.06 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.91977
Sweep:
SWEEP1
Files:
/programs/datagrid/535/out######.cbf
Images:
1 - 450
Beam:
(116.62, 113.17) -> (116.62, 113.24)
Distance:
300.0 -> 300.15
Spacegroup:
I 2 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.53 | 6.87 | 2.53 |
| Low resolution limit | 56.31 | 56.32 | 2.57 |
| Completeness | 100.0 | 99.8 | 100.0 |
| Multiplicity | 10.5 | 9.8 | 10.9 |
| I/sigma | 12.7 | 41.8 | 0.8 |
| Rmerge | 0.135 | 0.039 | 2.647 |
| CC half | 0.999 | 0.999 | 0.286 |
| Anomalous completeness | 100.0 | 99.9 | 99.9 |
| Anomalous multiplicity | 5.4 | 5.4 | 5.4 |
| Cell | 178.07 | 178.07 | 178.07 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.91977
Sweep:
SWEEP1
Files:
/programs/datagrid/535/out######.cbf
Images:
1 - 450
Beam:
(116.62, 113.17) -> (116.62, 113.24)
Distance:
300.0 -> 300.45
Spacegroup:
I 2 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.41 | 6.54 | 2.41 |
| Low resolution limit | 62.97 | 62.99 | 2.45 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 10.4 | 10.1 | 9.0 |
| I/sigma | 11.5 | 51.8 | 0.5 |
| Rmerge | 0.139 | 0.045 | 2.357 |
| CC half | 0.998 | 0.998 | 0.331 |
| Anomalous completeness | 100.0 | 100.0 | 100.0 |
| Anomalous multiplicity | 5.4 | 5.4 | 5.4 |
| Cell | 178.11 | 178.11 | 178.11 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
