X-Ray Diffraction data from PAK4cat-PAK4N45-CDC42, source of 5UPK structure

dataset logo thumbnail
Visualize in 3D >>

Data DOI: 10.15785/SBGRID/533 | ID: 533

5UPK Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Boggon Laboratory, Yale University School of Medicine

Release Date: 22 Dec 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/533

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/533 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/533 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/533 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/533 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 533 ; shasum -c files.sha'

Storage requirements: 9.5G

Biological Sample:

PAK4cat-PAK4N45-CDC42

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24-ID-E

Data Creation Date:

10 Feb 2014

Related Datasets:

None


Cite this Dataset

Ha, BHak; Boggon, TJ. 2017. "X-Ray Diffraction data for: PAK4cat-PAK4N45-CDC42. PDB Code 5UPK", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/533.

Download Citation

Dataset Description

Diffaction images

Project Members

Name Additional Roles Affiliation While Working on the Project
Titus J BoggonDepositorYale University
Byung Hak HaData CollectorYale University
Titus BoggonPIYale University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/1.8.5/dials-1.8.5/build/bin/xia2 pipeline=2d /programs/datagrid//533/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.8.5/dials-1.8.5/build/bin/xia2 pipeline=3d /programs/datagrid//533/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.8.5/dials-1.8.5/build/bin/xia2 pipeline=3dii /programs/datagrid//533/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.8.5/dials-1.8.5/build/bin/xia2 pipeline=dials /programs/datagrid//533/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP3

Files:

/programs/datagrid/533/TJB1BH-04-3_1_###.img

Images:

1 - 180

Beam:

(153.37, 158.89) -> (153.37, 158.97)

Distance:

300.0 -> 297.49

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.63 7.13 2.63
Low resolution limit 61.53 61.55 2.67
Completeness 99.8 100.0 95.7
Multiplicity 10.2 10.9 3.8
I/sigma 11.8 25.2 1.6
Rmerge 0.139 0.066 0.549
CC half 0.996 0.997 0.468
Anomalous completeness 99.8 100.0 95.7
Anomalous multiplicity 5.3 5.3 5.3
Cell 58.47 61.531 85.781 90.0 91.399 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.