Data DOI: 10.15785/SBGRID/519 | ID: 519
Publication DOI: 10.1016/j.cell.2018.06.017
6BJ3 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Garcia Laboratory, Stanford University
Release Date: 11 Jan 2019
1. If this dataset is locally available, it should be accessable at /programs/datagrid/519
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/519 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/519 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/519 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/519 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 519 ; shasum -c files.sha'
Storage requirements: 3.2G
Biological Sample:
TCR55 in complex with HIV(Pol448-456)/HLA-B35
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
ALS 8.2.2
Data Creation Date:
29 Apr 2016
Related Datasets:
None
Jude, KM; Garcia, KC; Sibener, LV; Garcia, K. 2019. "X-Ray Diffraction data for: TCR55 in complex with HIV(Pol448-456)/HLA-B35. PDB Code 6BJ3", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/519.
native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin M Jude | Data Collector, Depositor | Howard Hughes Medical Institute |
| K C Garcia | Stanford University | |
| Leah V Sibener | Stanford University | |
| K. Christopher Garcia | PI | Stanford University |
processed with HKL2000
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.99995
Sweep:
SWEEP1
Files:
/programs/datagrid/519/B15_1_#####.img
Images:
1 - 180
Beam:
(154.3, 163.1) -> (154.3, 162.74)
Distance:
240.0 -> 239.86
Spacegroup:
P 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.91 | 5.18 | 1.91 |
| Low resolution limit | 67.04 | 67.08 | 1.94 |
| Completeness | 97.1 | 88.9 | 99.4 |
| Multiplicity | 3.5 | 3.4 | 3.4 |
| I/sigma | 2.9 | 5.6 | 0.6 |
| Rmerge | 0.165 | 0.091 | 1.504 |
| CC half | 0.97 | 0.975 | 0.328 |
| Anomalous completeness | 83.1 | 71.6 | 86.3 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 91.8 | 61.23 | 204.2 | 90.0 | 99.97 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.99995
Sweep:
SWEEP1
Files:
/programs/datagrid/519/B15_1_#####.img
Images:
1 - 180
Beam:
(154.3, 163.1) -> (154.3, 162.78)
Distance:
240.0 -> 237.97
Spacegroup:
P 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.92 | 5.21 | 1.92 |
| Low resolution limit | 77.92 | 77.99 | 1.95 |
| Completeness | 97.5 | 92.1 | 99.3 |
| Multiplicity | 3.4 | 3.3 | 3.4 |
| I/sigma | 2.8 | 5.2 | 0.7 |
| Rmerge | 0.171 | 0.095 | 1.392 |
| CC half | 0.965 | 0.973 | 0.327 |
| Anomalous completeness | 82.9 | 70.5 | 86.5 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 91.7 | 61.21 | 204.71 | 90.0 | 99.44 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.99995
Sweep:
SWEEP1
Files:
/programs/datagrid/519/B15_1_#####.img
Images:
1 - 180
Beam:
(154.3, 163.1) -> (154.3, 162.77)
Distance:
240.0 -> 236.69
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.81 | 4.92 | 1.81 |
| Low resolution limit | 95.58 | 95.71 | 1.85 |
| Completeness | 99.9 | 100.0 | 99.1 |
| Multiplicity | 3.8 | 3.8 | 3.8 |
| I/sigma | 5.2 | 27.4 | -0.1 |
| Rmerge | 0.126 | 0.05 | -3.585 |
| CC half | 0.987 | 0.992 | 0.293 |
| Anomalous completeness | 92.7 | 97.7 | 88.7 |
| Anomalous multiplicity | 2.0 | 2.0 | 2.0 |
| Cell | 198.488 | 60.991 | 91.318 | 90.0 | 105.613 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
