X-Ray Diffraction data from TCR55 in complex with HIV(Pol448-456)/HLA-B35, source of 6BJ3 structure

Data DOI: 10.15785/SBGRID/519 | ID: 519

Publication DOI: 10.1016/j.cell.2018.06.017

6BJ3 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Garcia Laboratory, Stanford University

Release Date: Jan. 11, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/519

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/519 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/519 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/519 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/519 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 519 ; shasum -c files.sha'

Storage requirements: 3.2G

Biological Sample:

TCR55 in complex with HIV(Pol448-456)/HLA-B35

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ALS 8.2.2

Data Creation Date:

April 29, 2016

Related Datasets:

None


Cite this Dataset

Jude, KM; Garcia, KC; Sibener, LV; Garcia, K. 2019. "X-Ray Diffraction data for: TCR55 in complex with HIV(Pol448-456)/HLA-B35. PDB Code 6BJ3", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/519.

Download Citation

Dataset Description

native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin M JudeData Collector, DepositorHoward Hughes Medical Institute
K C GarciaStanford University
Leah V SibenerStanford University
K. Christopher GarciaPIStanford University

Reprocessing Instructions

processed with HKL2000

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.99995

Sweep:

SWEEP1

Files:

/programs/datagrid/519/B15_1_#####.img

Images:

1 - 180

Beam:

(154.3, 163.1) -> (154.3, 162.86)

Distance:

240.0 -> 239.63

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.99 5.4 1.99
Low resolution limit 58.06 58.09 2.02
Completeness 93.1 99.9 87.8
Multiplicity 3.3 3.6 3.5
I/sigma 4.5 8.3 1.2
Rmerge 0.121 0.068 0.68
CC half 0.984 0.989 0.606
Anomalous completeness 82.6 96.3 79.5
Anomalous multiplicity 1.8 1.8 1.8
Cell 200.087 61.445 92.388 90.0 105.587 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.99995

Sweep:

SWEEP1

Files:

/programs/datagrid/519/B15_1_#####.img

Images:

1 - 180

Beam:

(154.3, 163.1) -> (154.3, 162.74)

Distance:

240.0 -> 239.4

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.98 5.37 1.98
Low resolution limit 67.24 67.28 2.01
Completeness 96.8 89.9 99.7
Multiplicity 3.5 3.4 3.4
I/sigma 3.2 5.6 0.9
Rmerge 0.157 0.087 0.98
CC half 0.971 0.979 0.492
Anomalous completeness 83.1 72.6 87.3
Anomalous multiplicity 1.9 1.9 1.9
Cell 91.8 61.26 204.68 90.0 99.76 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.99995

Sweep:

SWEEP1

Files:

/programs/datagrid/519/B15_1_#####.img

Images:

1 - 180

Beam:

(154.3, 163.1) -> (154.3, 162.78)

Distance:

240.0 -> 237.96

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.99 5.4 1.99
Low resolution limit 90.46 90.55 2.02
Completeness 97.3 92.5 99.7
Multiplicity 3.5 3.4 3.4
I/sigma 3.0 5.1 0.9
Rmerge 0.167 0.094 0.935
CC half 0.963 0.977 0.475
Anomalous completeness 83.1 71.8 87.2
Anomalous multiplicity 1.9 1.9 1.9
Cell 91.7 61.22 204.73 90.0 99.43 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.99995

Sweep:

SWEEP1

Files:

/programs/datagrid/519/B15_1_#####.img

Images:

1 - 180

Beam:

(154.3, 163.1) -> (154.3, 162.77)

Distance:

240.0 -> 237.12

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.02 5.5 2.02
Low resolution limit 87.92 88.01 2.06
Completeness 99.1 99.8 81.8
Multiplicity 3.6 3.6 3.7
I/sigma 4.5 7.9 1.3
Rmerge 0.113 0.046 0.711
CC half 0.983 0.996 0.974
Anomalous completeness 91.9 97.2 74.6
Anomalous multiplicity 1.9 1.9 1.9
Cell 198.415 60.964 91.291 90.0 105.611 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.