X-Ray Diffraction data from TCR589 in complex with HIV(Pol448-456)/HLA-B35, source of 6BJ2 structure

Data DOI: 10.15785/SBGRID/518 | ID: 518

Publication DOI: 10.1016/j.cell.2018.06.017

6BJ2 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Garcia Laboratory, Stanford University

Release Date: Jan. 11, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/518

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/518 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/518 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/518 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/518 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 518 ; shasum -c files.sha'

Storage requirements: 5.3G

Biological Sample:

TCR589 in complex with HIV(Pol448-456)/HLA-B35

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

SSRL 12-2

Data Creation Date:

Feb. 28, 2016

Related Datasets:

None


Cite this Dataset

Jude, KM; Garcia, KC; Sibener, LV; Garcia, K. 2019. "X-Ray Diffraction data for: TCR589 in complex with HIV(Pol448-456)/HLA-B35. PDB Code 6BJ2", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/518.

Download Citation

Dataset Description

TCR589 in complex with HIV(Pol448-456)/HLA-B35

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevi M JudeData Collector, DepositorHoward Hughes Medical Institute
K C GarciaStanford University
Leah V SibenerStanford University
K. Christopher GarciaPIStanford University

Reprocessing Instructions

processed with xds

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/518/589B35_5_#####.cbf

Images:

1 - 900

Beam:

(217.32, 211.82) -> (217.32, 211.8)

Distance:

500.0 -> 497.79

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.75 12.75 4.75
Low resolution limit 38.9 38.9 4.83
Completeness 94.7 92.5 94.8
Multiplicity 3.2 2.8 3.2
I/sigma 14.3 21.1 11.7
Rmerge 0.05 0.029 0.084
CC half 0.995 0.996 0.977
Anomalous completeness 83.9 82.4 79.9
Anomalous multiplicity 1.8 1.8 1.8
Cell 155.59 59.01 123.0 90.0 110.71 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/518/589B35_5_#####.cbf

Images:

1 - 900

Beam:

(217.32, 211.82) -> (217.32, 211.83)

Distance:

500.0 -> 497.8

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.72 12.76 4.72
Low resolution limit 55.69 55.7 4.8
Completeness 95.5 93.0 96.9
Multiplicity 3.2 2.9 3.3
I/sigma 7.0 10.3 5.8
Rmerge 0.071 0.031 0.127
CC half 0.985 0.96 0.985
Anomalous completeness 87.2 83.8 85.4
Anomalous multiplicity 1.8 1.8 1.8
Cell 122.92 58.97 155.53 90.0 110.72 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/518/589B35_5_#####.cbf

Images:

1 - 900

Beam:

(217.32, 211.82) -> (217.32, 211.84)

Distance:

500.0 -> 499.87

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.04 10.93 4.04
Low resolution limit 55.8 55.8 4.1
Completeness 96.3 94.5 88.9
Multiplicity 3.3 3.1 3.3
I/sigma 5.9 7.4 4.5
Rmerge 0.103 0.065 0.191
CC half 0.975 0.957 0.945
Anomalous completeness 93.6 93.9 84.5
Anomalous multiplicity 1.7 1.7 1.7
Cell 155.771 59.042 123.173 90.0 110.724 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.