Data DOI: 10.15785/SBGRID/517 | ID: 517
Publication DOI: 10.1016/j.cell.2018.06.017
6BJ8 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Garcia Laboratory, Stanford University
Release Date: 11 Jan 2019
1. If this dataset is locally available, it should be accessable at /programs/datagrid/517
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/517 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/517 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/517 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/517 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 517 ; shasum -c files.sha'
Storage requirements: 4.4G
Biological Sample:
TCR55 in complex with Pep20/HLA-B35
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
SSRL 12-2
Data Creation Date:
23 Jan 2017
Related Datasets:
None
Jude, KM; Garcia, KC; Sibener, LV; Yang, X; Garcia, K. 2019. "X-Ray Diffraction data for: TCR55 in complex with Pep20/HLA-B35. PDB Code 6BJ8", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/517.
native data
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin M Jude | Depositor | Howard Hughes Medical Institute |
| K C Garcia | Stanford University | |
| Leah V Sibener | Stanford University | |
| Xinbo Yang | Data Collector | Stanford University |
| K. Christopher Garcia | PI | Stanford University |
processed with xds
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97946
Sweep:
SWEEP1
Files:
/programs/datagrid/517/55B35P20_crystal_1_#####.cbf
Images:
1 - 744
Beam:
(217.32, 211.82) -> (217.32, 211.94)
Distance:
350.0 -> 349.99
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.62 | 4.4 | 1.62 |
| Low resolution limit | 44.93 | 44.95 | 1.65 |
| Completeness | 91.7 | 93.9 | 60.8 |
| Multiplicity | 2.7 | 2.8 | 1.9 |
| I/sigma | 10.9 | 31.9 | 0.9 |
| Rmerge | 0.049 | 0.022 | 0.807 |
| CC half | 0.993 | 0.981 | 0.346 |
| Anomalous completeness | 66.4 | 78.1 | 35.3 |
| Anomalous multiplicity | 1.6 | 1.6 | 1.6 |
| Cell | 194.53 | 61.67 | 92.13 | 90.0 | 104.77 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97946
Sweep:
SWEEP1
Files:
/programs/datagrid/517/55B35P20_crystal_1_#####.cbf
Images:
1 - 744
Beam:
(217.32, 211.82) -> (217.32, 211.94)
Distance:
350.0 -> 349.68
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.62 | 4.4 | 1.62 |
| Low resolution limit | 57.74 | 57.78 | 1.65 |
| Completeness | 91.7 | 93.8 | 60.9 |
| Multiplicity | 2.7 | 2.8 | 1.9 |
| I/sigma | 10.9 | 31.9 | 0.9 |
| Rmerge | 0.048 | 0.022 | 0.808 |
| CC half | 0.993 | 0.981 | 0.344 |
| Anomalous completeness | 66.4 | 78.2 | 35.3 |
| Anomalous multiplicity | 1.6 | 1.6 | 1.6 |
| Cell | 194.53 | 61.66 | 92.13 | 90.0 | 104.77 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97946
Sweep:
SWEEP1
Files:
/programs/datagrid/517/55B35P20_crystal_1_#####.cbf
Images:
1 - 744
Beam:
(217.32, 211.82) -> (217.32, 211.95)
Distance:
350.0 -> 349.33
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.56 | 4.24 | 1.56 |
| Low resolution limit | 50.82 | 50.85 | 1.59 |
| Completeness | 87.5 | 94.3 | 47.2 |
| Multiplicity | 2.7 | 2.9 | 1.8 |
| I/sigma | 14.9 | 62.1 | 0.7 |
| Rmerge | 0.051 | 0.027 | 0.721 |
| CC half | 0.998 | 0.997 | 0.349 |
| Anomalous completeness | 63.9 | 81.9 | 25.8 |
| Anomalous multiplicity | 1.6 | 1.6 | 1.6 |
| Cell | 194.429 | 61.624 | 92.113 | 90.0 | 104.796 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
