X-Ray Diffraction data from TCR55 in complex with Pep20/HLA-B35, source of 6BJ8 structure

Data DOI: 10.15785/SBGRID/517 | ID: 517

Publication DOI: 10.1016/j.cell.2018.06.017

6BJ8 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Garcia Laboratory, Stanford University

Release Date: Jan. 11, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/517

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/517 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/517 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/517 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/517 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 517 ; shasum -c files.sha'

Storage requirements: 4.4G

Biological Sample:

TCR55 in complex with Pep20/HLA-B35

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

SSRL 12-2

Data Creation Date:

Jan. 23, 2017

Related Datasets:

None


Cite this Dataset

Jude, KM; Garcia, KC; Sibener, LV; Yang, X; Garcia, K. 2019. "X-Ray Diffraction data for: TCR55 in complex with Pep20/HLA-B35. PDB Code 6BJ8", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/517.

Download Citation

Dataset Description

native data

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin M JudeDepositorHoward Hughes Medical Institute
K C GarciaStanford University
Leah V SibenerStanford University
Xinbo YangData CollectorStanford University
K. Christopher GarciaPIStanford University

Reprocessing Instructions

processed with xds

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/517/55B35P20_crystal_1_#####.cbf

Images:

1 - 744

Beam:

(217.32, 211.82) -> (217.32, 212.06)

Distance:

350.0 -> 350.22

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.67 4.53 1.67
Low resolution limit 74.99 75.06 1.7
Completeness 90.5 91.3 63.3
Multiplicity 2.6 2.8 1.9
I/sigma 6.2 14.5 1.0
Rmerge 0.071 0.049 0.554
CC half 0.973 0.989 0.37
Anomalous completeness 65.1 78.8 36.3
Anomalous multiplicity 1.5 1.5 1.5
Cell 194.605 61.727 92.231 90.0 104.81 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/517/55B35P20_crystal_1_#####.cbf

Images:

1 - 744

Beam:

(217.32, 211.82) -> (217.32, 211.94)

Distance:

350.0 -> 349.87

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.64 4.45 1.64
Low resolution limit 44.93 44.95 1.67
Completeness 92.6 93.6 65.8
Multiplicity 2.7 2.8 1.9
I/sigma 10.9 31.6 1.0
Rmerge 0.048 0.022 0.748
CC half 0.998 0.998 0.341
Anomalous completeness 66.6 78.3 38.9
Anomalous multiplicity 1.6 1.6 1.6
Cell 194.53 61.67 92.13 90.0 104.77 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/517/55B35P20_crystal_1_#####.cbf

Images:

1 - 744

Beam:

(217.32, 211.82) -> (217.32, 211.93)

Distance:

350.0 -> 349.69

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.64 4.45 1.64
Low resolution limit 44.93 44.95 1.67
Completeness 92.6 93.6 65.8
Multiplicity 2.7 2.8 1.9
I/sigma 10.9 31.5 1.0
Rmerge 0.048 0.022 0.749
CC half 0.998 0.998 0.342
Anomalous completeness 66.6 78.3 38.8
Anomalous multiplicity 1.6 1.6 1.6
Cell 194.53 61.66 92.13 90.0 104.77 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/517/55B35P20_crystal_1_#####.cbf

Images:

1 - 744

Beam:

(217.32, 211.82) -> (217.32, 211.94)

Distance:

350.0 -> 349.46

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.6 4.34 1.6
Low resolution limit 74.9 74.98 1.63
Completeness 89.1 93.4 52.1
Multiplicity 2.7 2.9 1.8
I/sigma 8.7 23.4 0.8
Rmerge 0.052 0.027 0.738
CC half 0.998 0.997 0.411
Anomalous completeness 64.8 81.1 28.2
Anomalous multiplicity 1.6 1.6 1.6
Cell 194.429 61.628 92.115 90.0 104.793 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.