X-Ray Diffraction data from 2B4-IEk TCR-MHC complex with affinity-enhancing Velcro peptide, source of 6BGA structure

Data DOI: 10.15785/SBGRID/515 | ID: 515

Publication DOI: 10.1073/pnas.1802746115

6BGA Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Garcia Laboratory, Stanford University

Release Date: Jan. 11, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/515

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/515 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/515 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/515 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/515 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 515 ; shasum -c files.sha'

Storage requirements: 5.6G

Biological Sample:

2B4-IEk TCR-MHC complex with affinity-enhancing Velcro peptide

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

SSRL 11-1

Data Creation Date:

Feb. 28, 2014

Related Datasets:

None


Cite this Dataset

Jude, KM; Birnbaum, ME; Garcia, KC; Gee, MH; Sibener, LV; Garcia, K. 2019. "X-Ray Diffraction data for: 2B4-IEk TCR-MHC complex with affinity-enhancing Velcro peptide. PDB Code 6BGA", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/515.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin M JudeDepositorHoward Hughes Medical Institute
Michael E BirnbaumData CollectorStanford University
K C GarciaStanford University
Marvin H GeeStanford University
Leah V SibenerStanford University
K. Christopher GarciaPIStanford University

Reprocessing Instructions

data were processed with XDS

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97945

Sweep:

SWEEP1

Files:

/programs/datagrid/515/B16_13_#####.cbf

Images:

1 - 950

Beam:

(217.32, 211.82) -> (217.32, 211.55)

Distance:

450.0 -> 449.46

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.27 6.16 2.27
Low resolution limit 73.87 73.91 2.31
Completeness 84.4 87.7 87.6
Multiplicity 2.0 2.0 2.0
I/sigma 3.8 8.7 1.1
Rmerge 0.181 0.06 0.745
CC half 0.978 0.992 0.343
Anomalous completeness 68.3 77.6 68.3
Anomalous multiplicity 1.1 1.1 1.1
Cell 58.88 78.994 121.732 107.367 103.974 90.195

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97945

Sweep:

SWEEP1

Files:

/programs/datagrid/515/B16_13_#####.cbf

Images:

1 - 950

Beam:

(217.32, 211.82) -> (217.32, 211.49)

Distance:

450.0 -> 448.39

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.18 5.92 2.18
Low resolution limit 56.15 56.17 2.22
Completeness 97.1 96.8 93.1
Multiplicity 3.6 3.5 3.6
I/sigma 6.2 16.4 1.1
Rmerge 0.111 0.043 0.857
CC half 0.993 0.994 0.54
Anomalous completeness 93.1 94.4 87.6
Anomalous multiplicity 1.9 1.9 1.9
Cell 236.01 58.848 79.107 90.0 107.877 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.