Data DOI: 10.15785/SBGRID/515 | ID: 515
Publication DOI: 10.1073/pnas.1802746115
6BGA Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Garcia Laboratory, Stanford University
Release Date: 11 Jan 2019
1. If this dataset is locally available, it should be accessable at /programs/datagrid/515
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/515 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/515 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/515 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/515 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 515 ; shasum -c files.sha'
Storage requirements: 5.6G
Biological Sample:
2B4-IEk TCR-MHC complex with affinity-enhancing Velcro peptide
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
SSRL 11-1
Data Creation Date:
28 Feb 2014
Related Datasets:
None
Jude, KM; Birnbaum, ME; Garcia, KC; Gee, MH; Sibener, LV; Garcia, K. 2019. "X-Ray Diffraction data for: 2B4-IEk TCR-MHC complex with affinity-enhancing Velcro peptide. PDB Code 6BGA", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/515.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin M Jude | Depositor | Howard Hughes Medical Institute |
| Michael E Birnbaum | Data Collector | Stanford University |
| K C Garcia | Stanford University | |
| Marvin H Gee | Stanford University | |
| Leah V Sibener | Stanford University | |
| K. Christopher Garcia | PI | Stanford University |
data were processed with XDS
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97945
Sweep:
SWEEP1
Files:
/programs/datagrid/515/B16_13_#####.cbf
Images:
1 - 950
Beam:
(217.32, 211.82) -> (217.32, 211.49)
Distance:
450.0 -> 446.7
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.21 | 5.99 | 2.21 |
| Low resolution limit | 46.27 | 46.28 | 2.25 |
| Completeness | 97.8 | 97.6 | 97.9 |
| Multiplicity | 3.6 | 3.5 | 3.8 |
| I/sigma | 7.4 | 24.4 | 0.8 |
| Rmerge | 0.119 | 0.031 | 1.337 |
| CC half | 0.993 | 0.998 | 0.336 |
| Anomalous completeness | 92.8 | 92.2 | 93.6 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 235.96 | 58.86 | 79.12 | 90.0 | 107.88 | 90.0 |
|---|
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97945
Sweep:
SWEEP1
Files:
/programs/datagrid/515/B16_13_#####.cbf
Images:
1 - 950
Beam:
(217.32, 211.82) -> (217.32, 211.49)
Distance:
450.0 -> 448.24
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.02 | 5.48 | 2.02 |
| Low resolution limit | 56.91 | 56.93 | 2.06 |
| Completeness | 91.7 | 97.5 | 56.3 |
| Multiplicity | 3.6 | 3.5 | 3.3 |
| I/sigma | 8.3 | 33.5 | 0.5 |
| Rmerge | 0.126 | 0.042 | 1.433 |
| CC half | 0.992 | 0.994 | 0.296 |
| Anomalous completeness | 88.1 | 94.7 | 51.4 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 235.891 | 58.831 | 79.08 | 90.0 | 107.873 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
