Data DOI: 10.15785/SBGRID/512 | ID: 512
Publication DOI: 10.1038/s41477-017-0022-8
5Y79 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Nureki Laboratory, The University of Tokyo
Release Date: 27 Oct 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/512
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/512 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/512 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/512 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/512 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 512 ; shasum -c files.sha'
Storage requirements: 107G
Biological Sample:
Triose-phosphate/phosphate translocator in complex with 3-phosphoglycerate
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
SPring-8 beamline BL32XU
Data Creation Date:
21 Sep 2016
Related Datasets:
None
Yamashita, K; Hirata, K; Lee, Y; Nureki, O. 2017. "X-Ray Diffraction data for: Triose-phosphate/phosphate translocator in complex with 3-phosphoglycerate. PDB Code 5Y79", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/512.
Triose-phosphate/phosphate translocator in complex with 3-phosphoglycerate
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Keitaro Yamashita | Depositor | RIKEN SPring-8 Center |
| Kunio Hirata | RIKEN SPring-8 Center | |
| Yongchan Lee | Data Collector | Department of Biological Sciences, Graduate School of Science, The University of Tokyo |
| Osamu Nureki | PI | The University of Tokyo |
199 datasets were merged at 2.2 Å resolution in the published result using KAMO (XDS/XSCALE used for integration/merging); see https://github.com/keitaroyam/yamtbx/wiki/Processing-TPT-data-(5Y78-&-5Y79)
Version:
version unreported
Reprocessing failed.
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Version:
version unreported
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License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
