X-Ray Diffraction data from SK678BR, source of structure

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Data DOI: 10.15785/SBGRID/510 | ID: 510

Iverson Laboratory, Vanderbilt University

Release Date: Jan. 4, 2022

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/510

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/510 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/510 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/510 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/510 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 510 ; shasum -c files.sha'

Storage requirements: 2.2G

Biological Sample:

SK678BR

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

SSRL 9-2

Data Creation Date:

Feb. 3, 2017

Related Datasets:

None


Cite this Dataset

Yamakawa, I; Iverson, T. 2022. "X-Ray Diffraction data for: SK678BR.", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/510.

Download Citation

Dataset Description

X-ray diffraction images of the binding region of SK678.

Project Members

Name Additional Roles Affiliation While Working on the Project
Izumi YamakawaData Collector, DepositorVanderbilt University
Tina IversonPIVanderbilt University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/510/empty_4_#####.cbf

Images:

1 - 360

Beam:

(217.32, 211.82) -> (217.32, 211.87)

Distance:

350.0 -> 349.43

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.62 4.4 1.62
Low resolution limit 41.77 41.78 1.65
Completeness 80.1 87.5 38.3
Multiplicity 3.8 3.6 3.7
I/sigma 9.4 28.9 0.8
Rmerge 0.083 0.028 1.207
CC half 0.997 0.997 0.339
Anomalous completeness 74.5 73.3 35.6
Anomalous multiplicity 2.0 2.0 2.0
Cell 59.59 59.65 61.86 90.06 100.76 90.03

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/510/empty_4_#####.cbf

Images:

1 - 360

Beam:

(217.32, 211.82) -> (217.32, 211.86)

Distance:

350.0 -> 349.4

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.62 4.4 1.62
Low resolution limit 41.77 41.78 1.65
Completeness 80.1 87.6 38.3
Multiplicity 3.8 3.6 3.7
I/sigma 9.4 28.9 0.8
Rmerge 0.083 0.028 1.213
CC half 0.997 0.997 0.327
Anomalous completeness 74.5 73.3 35.6
Anomalous multiplicity 2.0 2.0 2.0
Cell 59.59 59.65 61.86 90.06 100.76 90.03

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/510/empty_4_#####.cbf

Images:

1 - 360

Beam:

(217.32, 211.82) -> (217.32, 211.85)

Distance:

350.0 -> 349.73

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.52 4.13 1.52
Low resolution limit 46.81 46.83 1.55
Completeness 79.7 97.2 29.7
Multiplicity 6.8 6.9 5.0
I/sigma 4.9 24.5 0.2
Rmerge 0.116 0.056 1.789
CC half 0.997 0.998 0.287
Anomalous completeness 79.1 97.6 28.4
Anomalous multiplicity 3.5 3.5 3.5
Cell 59.67 59.729 61.93 90.0 100.775 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.