X-Ray Diffraction data from GspB siglec domain with sialyl T antigen, source of 5IUC structure

Data DOI: 10.15785/SBGRID/507 | ID: 507

5IUC Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Iverson Laboratory, Vanderbilt University

Release Date: 20 Oct 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/507

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/507 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/507 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/507 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/507 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 507 ; shasum -c files.sha'

Storage requirements: 6.4G

Biological Sample:

GspB siglec domain with sialyl T antigen

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

APS Beamline 21-ID-F

Data Creation Date:

17 Dec 2015

Related Datasets:

None


Cite this Dataset

Fialkowski, KP; Loukachevitch, LV; Iverson, T. 2017. "X-Ray Diffraction data for: GspB siglec domain with sialyl T antigen. PDB Code 5IUC", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/507.

Download Citation

Dataset Description

GspB siglec domain (with sialyl T antigen bound) in space group P 21 21 2

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin P FialkowskiDepositorVanderbilt University
Lioudmila V LoukachevitchData CollectorVanderbilt University
Tina IversonPIVanderbilt University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/507/cn045a-6.###

Images:

1 - 360

Beam:

(112.34, 112.12) -> (112.34, 112.79)

Distance:

110.0 -> 110.76

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.06 2.88 1.06
Low resolution limit 23.74 23.75 1.08
Completeness 71.2 98.8 7.6
Multiplicity 14.4 13.6 6.0
I/sigma 20.7 48.8 0.4
Rmerge 0.067 0.043 3.535
CC half 0.999 0.998 0.179
Anomalous completeness 70.9 99.2 6.8
Anomalous multiplicity 7.5 7.5 7.5
Cell 66.58 67.73 55.89 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/507/cn045a-6.###

Images:

1 - 360

Beam:

(112.34, 112.12) -> (112.34, 112.8)

Distance:

110.0 -> 110.62

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.07 2.9 1.07
Low resolution limit 43.11 43.14 1.09
Completeness 73.1 98.7 11.7
Multiplicity 14.4 13.6 7.6
I/sigma 20.8 48.8 0.7
Rmerge 0.067 0.043 2.362
CC half 0.999 0.998 0.181
Anomalous completeness 72.8 99.3 11.5
Anomalous multiplicity 7.5 7.5 7.5
Cell 66.58 67.73 55.89 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/507/cn045a-6.###

Images:

1 - 360

Beam:

(112.34, 112.12) -> (112.34, 112.86)

Distance:

110.0 -> 110.79

Spacegroup:

P 2 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.06 2.87 1.06
Low resolution limit 55.89 55.96 1.08
Completeness 71.0 99.5 6.2
Multiplicity 14.2 14.3 4.2
I/sigma 14.6 53.7 24.4
Rmerge 0.082 0.054 0.192
CC half 0.992 0.996 0.388
Anomalous completeness 70.7 99.7 5.3
Anomalous multiplicity 7.4 7.4 7.4
Cell 55.885 66.607 67.677 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.