X-Ray Diffraction data from GspB siglec domain with sialyl T antigen, source of 5IUC structure

Data DOI: 10.15785/SBGRID/507 | ID: 507

5IUC Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Iverson Laboratory, Vanderbilt University

Release Date: Oct. 20, 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/507

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/507 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/507 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/507 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/507 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 507 ; shasum -c files.sha'

Storage requirements: 6.4G

Biological Sample:

GspB siglec domain with sialyl T antigen

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

APS Beamline 21-ID-F

Data Creation Date:

Dec. 17, 2015

Related Datasets:

None


Cite this Dataset

Fialkowski, KP; Loukachevitch, LV; Iverson, T. 2017. "X-Ray Diffraction data for: GspB siglec domain with sialyl T antigen. PDB Code 5IUC", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/507.

Download Citation

Dataset Description

GspB siglec domain (with sialyl T antigen bound) in space group P 21 21 2

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin P FialkowskiDepositorVanderbilt University
Lioudmila V LoukachevitchData CollectorVanderbilt University
Tina IversonPIVanderbilt University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/507/cn045a-6.###

Images:

1 - 360

Beam:

(112.34, 112.12) -> (112.34, 112.79)

Distance:

110.0 -> 110.74

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.06 2.88 1.06
Low resolution limit 23.74 23.75 1.08
Completeness 71.4 98.7 7.4
Multiplicity 14.4 13.7 6.0
I/sigma 20.7 48.8 0.4
Rmerge 0.067 0.042 3.577
CC half 0.999 0.999 0.103
Anomalous completeness 71.2 98.9 6.7
Anomalous multiplicity 7.5 7.5 7.5
Cell 66.58 67.73 55.89 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/507/cn045a-6.###

Images:

1 - 360

Beam:

(112.34, 112.12) -> (112.34, 112.8)

Distance:

110.0 -> 110.62

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.06 2.88 1.06
Low resolution limit 47.48 47.53 1.08
Completeness 71.4 98.7 7.4
Multiplicity 14.4 13.6 6.0
I/sigma 20.7 48.7 0.4
Rmerge 0.067 0.042 3.559
CC half 0.999 0.999 0.119
Anomalous completeness 71.2 98.9 6.7
Anomalous multiplicity 7.5 7.5 7.5
Cell 66.58 67.73 55.89 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/507/cn045a-6.###

Images:

1 - 360

Beam:

(112.34, 112.12) -> (112.34, 112.86)

Distance:

110.0 -> 110.77

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.06 2.88 1.06
Low resolution limit 47.47 47.52 1.08
Completeness 70.9 99.0 4.2
Multiplicity 14.3 14.3 2.1
I/sigma 17.0 37.7 0.1
Rmerge 0.074 0.049 3.318
CC half 0.999 0.999 0.155
Anomalous completeness 70.4 99.5 2.3
Anomalous multiplicity 7.5 7.5 7.5
Cell 66.604 67.689 55.888 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.