Data DOI: 10.15785/SBGRID/507 | ID: 507
5IUC Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Iverson Laboratory, Vanderbilt University
Release Date: 20 Oct 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/507
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/507 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/507 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/507 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/507 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 507 ; shasum -c files.sha'
Storage requirements: 6.4G
Biological Sample:
GspB siglec domain with sialyl T antigen
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
APS Beamline 21-ID-F
Data Creation Date:
17 Dec 2015
Related Datasets:
None
Fialkowski, KP; Loukachevitch, LV; Iverson, T. 2017. "X-Ray Diffraction data for: GspB siglec domain with sialyl T antigen. PDB Code 5IUC", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/507.
GspB siglec domain (with sialyl T antigen bound) in space group P 21 21 2
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin P Fialkowski | Depositor | Vanderbilt University |
| Lioudmila V Loukachevitch | Data Collector | Vanderbilt University |
| Tina Iverson | PI | Vanderbilt University |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/507/cn045a-6.###
Images:
1 - 360
Beam:
(112.34, 112.12) -> (112.34, 112.79)
Distance:
110.0 -> 110.76
Spacegroup:
P 21 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.06 | 2.88 | 1.06 |
| Low resolution limit | 23.74 | 23.75 | 1.08 |
| Completeness | 71.2 | 98.8 | 7.6 |
| Multiplicity | 14.4 | 13.6 | 6.0 |
| I/sigma | 20.7 | 48.8 | 0.4 |
| Rmerge | 0.067 | 0.043 | 3.535 |
| CC half | 0.999 | 0.998 | 0.179 |
| Anomalous completeness | 70.9 | 99.2 | 6.8 |
| Anomalous multiplicity | 7.5 | 7.5 | 7.5 |
| Cell | 66.58 | 67.73 | 55.89 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/507/cn045a-6.###
Images:
1 - 360
Beam:
(112.34, 112.12) -> (112.34, 112.8)
Distance:
110.0 -> 110.62
Spacegroup:
P 21 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.07 | 2.9 | 1.07 |
| Low resolution limit | 43.11 | 43.14 | 1.09 |
| Completeness | 73.1 | 98.7 | 11.7 |
| Multiplicity | 14.4 | 13.6 | 7.6 |
| I/sigma | 20.8 | 48.8 | 0.7 |
| Rmerge | 0.067 | 0.043 | 2.362 |
| CC half | 0.999 | 0.998 | 0.181 |
| Anomalous completeness | 72.8 | 99.3 | 11.5 |
| Anomalous multiplicity | 7.5 | 7.5 | 7.5 |
| Cell | 66.58 | 67.73 | 55.89 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/507/cn045a-6.###
Images:
1 - 360
Beam:
(112.34, 112.12) -> (112.34, 112.86)
Distance:
110.0 -> 110.79
Spacegroup:
P 2 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.06 | 2.87 | 1.06 |
| Low resolution limit | 55.89 | 55.96 | 1.08 |
| Completeness | 71.0 | 99.5 | 6.2 |
| Multiplicity | 14.2 | 14.3 | 4.2 |
| I/sigma | 14.6 | 53.7 | 24.4 |
| Rmerge | 0.082 | 0.054 | 0.192 |
| CC half | 0.992 | 0.996 | 0.388 |
| Anomalous completeness | 70.7 | 99.7 | 5.3 |
| Anomalous multiplicity | 7.4 | 7.4 | 7.4 |
| Cell | 55.885 | 66.607 | 67.677 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
