X-Ray Diffraction data from Robo1 Ig1-4 Crystal 2, source of 5OPE structure

Data DOI: 10.15785/SBGRID/504 | ID: 504

Publication DOI: 10.1016/j.str.2017.12.003

5OPE Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

McCarthy Laboratory, EMBL - Grenoble

Release Date: Jan. 23, 2018

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/504

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/504 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/504 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/504 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/504 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 504 ; shasum -c files.sha'

Storage requirements: 6.4G

Biological Sample:

Robo1 Ig1-4 Crystal 2

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ID14-4 at the ESRF

Data Creation Date:

Sept. 13, 2007

Related Datasets:

None


Cite this Dataset

McCarthy, AA.. 2018. "X-Ray Diffraction data for: Robo1 Ig1-4 Crystal 2. PDB Code 5OPE", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/504.

Download Citation

Dataset Description

Robo1 Ig1-4 Crystal form 2

Project Members

Name Additional Roles Affiliation While Working on the Project
Andrew A. McCarthyData Collector, DepositorEMBL-Grenoble
Andrew McCarthyPIEMBL - Grenoble

Reprocessing Instructions

Only used the first 180 images for structure solution and refinement

Processing Bundle

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9395

Sweep:

SWEEP1

Files:

/programs/datagrid/504/x96lite11-30gl-2_2_###.img

Images:

1 - 360

Beam:

(158.06, 156.7) -> (158.06, 156.72)

Distance:

427.48 -> 425.24

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.75 7.45 2.75
Low resolution limit 41.3 41.3 2.8
Completeness 99.3 100.0 98.7
Multiplicity 7.1 6.3 7.2
I/sigma 3.4 5.1 1.1
Rmerge 0.252 0.105 1.724
CC half 0.986 0.99 0.771
Anomalous completeness 98.4 98.9 98.2
Anomalous multiplicity 3.8 3.8 3.8
Cell 43.74 99.58 250.57 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9395

Sweep:

SWEEP1

Files:

/programs/datagrid/504/x96lite11-30gl-2_2_###.img

Images:

1 - 360

Beam:

(158.06, 156.7) -> (158.06, 156.73)

Distance:

427.48 -> 428.66

Spacegroup:

C 2 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.47 6.69 2.47
Low resolution limit 40.05 40.05 2.51
Completeness 98.1 99.6 85.2
Multiplicity 6.6 6.2 4.2
I/sigma 5.4 10.3 0.9
Rmerge 0.2 0.102 1.27
CC half 0.987 0.988 0.415
Anomalous completeness 95.8 99.1 72.6
Anomalous multiplicity 3.6 3.6 3.6
Cell 43.74 99.59 250.63 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9395

Sweep:

SWEEP1

Files:

/programs/datagrid/504/x96lite11-30gl-2_2_###.img

Images:

1 - 360

Beam:

(158.06, 156.7) -> (158.06, 156.73)

Distance:

427.48 -> 423.2

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.29 6.21 2.29
Low resolution limit 61.75 61.78 2.33
Completeness 82.3 99.2 27.6
Multiplicity 3.8 3.7 3.5
I/sigma 3.2 5.0 1.1
Rmerge 0.215 0.127 0.752
CC half 0.964 0.964 0.847
Anomalous completeness 70.1 90.6 21.0
Anomalous multiplicity 2.0 2.0 2.0
Cell 43.356 247.017 53.86 90.0 113.535 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.