X-Ray Diffraction data from MERS-CoV S2-specific Fab G4, source of 5VZR structure

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Data DOI: 10.15785/SBGRID/496 | ID: 496

Publication DOI: 10.1073/pnas.1707304114

5VZR Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

McLellan Laboratory, University of Texas at Austin

Release Date: 19 Sep 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/496

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/496 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/496 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/496 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/496 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 496 ; shasum -c files.sha'

Storage requirements: 7.0G

Biological Sample:

MERS-CoV S2-specific Fab G4

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

19-ID, SBC, APS, Chicago, IL

Data Creation Date:

26 Feb 2016

Related Datasets:

None


Cite this Dataset

Wang, N; McLellan, JS. 2017. "X-Ray Diffraction data for: MERS-CoV S2-specific Fab G4. PDB Code 5VZR", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/496.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Nianshuang WangData Collector, DepositorGeisel School of Medicine at Dartmouth
Jason S McLellanGeisel School of Medicine at Dartmouth
Jason McLellanPIUniversity of Texas at Austin

Reprocessing Instructions

Beam center, as defined in the header, needs to be corrected to X=217.6 Y=215.3 Processing with iMosflm will require "Reverse direction of spindle rotation" to be checked.

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//496/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//496/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//496/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97926

Sweep:

SWEEP1

Files:

/programs/datagrid/496/P1P7_G4_X1_#####.cbf

Images:

0 - 1199

Beam:

(217.58, 215.0) -> (217.58, 215.13)

Distance:

292.15 -> 290.19

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.47 3.99 1.47
Low resolution limit 44.38 44.4 1.49
Completeness 99.6 100.0 93.8
Multiplicity 6.3 6.5 4.0
I/sigma 9.3 51.6 0.2
Rmerge 0.073 0.037 1.522
CC half 0.996 0.993 0.326
Anomalous completeness 98.6 100.0 84.9
Anomalous multiplicity 3.3 3.3 3.3
Cell 80.934 88.755 128.589 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.