X-Ray Diffraction data from MERS-CoV S1 NTD, source of 5VYH structure

Data DOI: 10.15785/SBGRID/495 | ID: 495

Publication DOI: 10.1073/pnas.1707304114

5VYH Coordinates: Viewer, PDB, MMDB

McLellan Laboratory, Dartmouth Geisel School of Medicine

Release Date: 19 Sep 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/495

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/495 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/495 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/495 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/495 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 495 ; shasum -c files.sha'

Storage requirements: 12G

Biological Sample:

MERS-CoV S1 NTD

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

BL14-1, SSRL, SLAC National Accelerator Laboratory

Data Creation Date:

3 Dec 2015

Related Datasets:

None


Cite this Dataset

Wang, N; McLellan, JS. 2017. "X-Ray Diffraction data for: MERS-CoV S1 NTD. PDB Code 5VYH", SBGrid Data Bank, V1, http://dx.doi.org/10.15785/SBGRID/495.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Nianshuang WangData Collector, DepositorGeisel School of Medicine at Dartmouth
Jason S McLellanGeisel School of Medicine at Dartmouth
Jason McLellanPIDartmouth Geisel School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.18076

Sweep:

SWEEP1

Files:

/programs/datagrid/495/NTD_X3_12_#####.mccd

Images:

1 - 360

Beam:

(162.5, 162.5) -> (162.5, 162.29)

Distance:

250.0 -> 250.2

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.96 5.32 1.96
Low resolution limit 66.51 66.55 1.99
Completeness 97.0 100.0 72.9
Multiplicity 3.6 3.6 2.9
I/sigma 6.6 13.3 1.3
Rmerge 0.104 0.051 0.845
CC half 0.991 0.992 0.561
Anomalous completeness 89.2 98.8 64.9
Anomalous multiplicity 1.9 1.9 1.9
Cell 84.496 49.857 107.898 90.0 90.021 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.18076

Sweep:

SWEEP1

Files:

/programs/datagrid/495/NTD_X3_12_#####.mccd

Images:

1 - 360

Beam:

(162.5, 162.5) -> (162.5, 162.15)

Distance:

250.0 -> 250.53

Spacegroup:

C 2 2 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.99 5.4 1.99
Low resolution limit 45.51 45.52 2.02
Completeness 98.7 99.6 89.8
Multiplicity 6.7 5.8 5.3
I/sigma 7.0 16.4 1.1
Rmerge 0.154 0.047 1.228
CC half 0.991 0.997 0.635
Anomalous completeness 97.3 96.3 89.6
Anomalous multiplicity 3.5 3.5 3.5
Cell 169.22 215.92 49.95 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.18076

Sweep:

SWEEP1

Files:

/programs/datagrid/495/NTD_X3_12_#####.mccd

Images:

1 - 360

Beam:

(162.5, 162.5) -> (162.5, 162.22)

Distance:

250.0 -> 247.85

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.91 5.18 1.91
Low resolution limit 49.72 49.74 1.94
Completeness 97.5 100.0 79.6
Multiplicity 6.5 5.8 4.4
I/sigma 12.1 30.3 1.3
Rmerge 0.098 0.038 1.023
CC half 0.995 0.997 0.519
Anomalous completeness 96.8 98.5 79.7
Anomalous multiplicity 3.5 3.5 3.5
Cell 49.72 84.19 107.47 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.18076

Sweep:

SWEEP1

Files:

/programs/datagrid/495/NTD_X3_12_#####.mccd

Images:

1 - 360

Beam:

(162.5, 162.5) -> (162.5, 162.24)

Distance:

250.0 -> 250.55

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.85 5.02 1.85
Low resolution limit 49.92 49.94 1.88
Completeness 94.3 100.0 62.8
Multiplicity 6.5 6.7 2.7
I/sigma 5.9 11.0 1.1
Rmerge 0.161 0.116 0.615
CC half 0.987 0.985 0.467
Anomalous completeness 92.8 100.0 49.3
Anomalous multiplicity 3.4 3.4 3.4
Cell 49.923 84.598 107.915 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.