Data DOI: 10.15785/SBGRID/495 | ID: 495
Publication DOI: 10.1073/pnas.1707304114
5VYH Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
McLellan Laboratory, University of Texas at Austin
Release Date: 19 Sep 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/495
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/495 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/495 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/495 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/495 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 495 ; shasum -c files.sha'
Storage requirements: 12G
Biological Sample:
MERS-CoV S1 NTD
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
BL14-1, SSRL, SLAC National Accelerator Laboratory
Data Creation Date:
3 Dec 2015
Related Datasets:
None
Wang, N; McLellan, JS. 2017. "X-Ray Diffraction data for: MERS-CoV S1 NTD. PDB Code 5VYH", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/495.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Nianshuang Wang | Data Collector, Depositor | Geisel School of Medicine at Dartmouth |
| Jason S McLellan | Geisel School of Medicine at Dartmouth | |
| Jason McLellan | PI | University of Texas at Austin |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.18076
Sweep:
SWEEP1
Files:
/programs/datagrid/495/NTD_X3_12_#####.mccd
Images:
1 - 360
Beam:
(162.5, 162.5) -> (162.5, 162.13)
Distance:
250.0 -> 249.36
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.92 | 5.21 | 1.92 |
| Low resolution limit | 46.71 | 46.72 | 1.95 |
| Completeness | 93.1 | 91.8 | 64.9 |
| Multiplicity | 3.5 | 3.4 | 2.7 |
| I/sigma | 3.7 | 9.8 | 0.4 |
| Rmerge | 0.155 | 0.044 | 2.648 |
| CC half | 0.994 | 0.997 | 0.331 |
| Anomalous completeness | 81.5 | 81.1 | 57.0 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 136.89 | 49.89 | 274.14 | 90.0 | 103.82 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.18076
Sweep:
SWEEP1
Files:
/programs/datagrid/495/NTD_X3_12_#####.mccd
Images:
1 - 360
Beam:
(162.5, 162.5) -> (162.5, 162.35)
Distance:
250.0 -> 233.53
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.84 | 4.99 | 1.84 |
| Low resolution limit | 49.89 | 49.91 | 1.87 |
| Completeness | 94.5 | 100.0 | 67.3 |
| Multiplicity | 6.3 | 5.9 | 3.6 |
| I/sigma | 10.6 | 27.9 | 0.7 |
| Rmerge | 0.101 | 0.039 | 1.475 |
| CC half | 0.994 | 0.993 | 0.282 |
| Anomalous completeness | 93.8 | 98.7 | 66.9 |
| Anomalous multiplicity | 3.3 | 3.3 | 3.3 |
| Cell | 49.89 | 84.51 | 107.84 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.18076
Sweep:
SWEEP1
Files:
/programs/datagrid/495/NTD_X3_12_#####.mccd
Images:
1 - 360
Beam:
(162.5, 162.5) -> (162.5, 162.23)
Distance:
250.0 -> 250.55
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.15 | 5.83 | 2.15 |
| Low resolution limit | 133.05 | 133.31 | 2.18 |
| Completeness | 99.8 | 100.0 | 97.7 |
| Multiplicity | 3.7 | 3.6 | 3.7 |
| I/sigma | 4.2 | 8.9 | 1.1 |
| Rmerge | 0.351 | 0.147 | 0.94 |
| CC half | 0.781 | 0.901 | 0.009 |
| Anomalous completeness | 93.7 | 99.8 | 87.1 |
| Anomalous multiplicity | 2.0 | 2.0 | 2.0 |
| Cell | 137.018 | 49.899 | 274.382 | 90.0 | 103.814 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
