X-Ray Diffraction data from PAK4, source of 5VEF structure

Data DOI: 10.15785/SBGRID/494 | ID: 494

Publication DOI: 10.1016/j.bbapap.2017.10.004

5VEF Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Boggon Laboratory, Yale University School of Medicine

Release Date: 13 Oct 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/494

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/494 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/494 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/494 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/494 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 494 ; shasum -c files.sha'

Storage requirements: 6.4G

Biological Sample:

PAK4

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24-ID-E

Data Creation Date:

4 Nov 2015

Related Datasets:

None


Cite this Dataset

Ha, BHak; Zhang, EY; Boggon, TJ. 2017. "X-Ray Diffraction data for: PAK4. PDB Code 5VEF", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/494.

Download Citation

Dataset Description

2 180 degree sweeps

Project Members

Name Additional Roles Affiliation While Working on the Project
Titus J BoggonData Collector, DepositorYale University
Byung Hak HaData CollectorYale University
Eric Y ZhangData CollectorYale University
Titus BoggonPIYale University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97922

Sweep:

SWEEP2

Files:

/programs/datagrid/494/TJB7EZP9HAqp_1_###.img

Images:

1 - 180

Beam:

(151.61, 158.98) -> (151.61, 159.1)

Distance:

220.0 -> 219.29

Spacegroup:

P 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.96 5.32 1.96
Low resolution limit 61.84 61.87 1.99
Completeness 87.8 99.5 75.5
Multiplicity 4.8 6.4 3.5
I/sigma 11.6 24.2 2.8
Rmerge 0.132 0.053 0.584
CC half 0.993 0.997 0.599
Anomalous completeness 79.1 98.4 70.5
Anomalous multiplicity 2.6 2.6 2.6
Cell 61.842 62.033 182.577 90.0 90.042 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97922

Sweep:

SWEEP2

Files:

/programs/datagrid/494/TJB7EZP9HAqp_1_###.img

Images:

1 - 180

Beam:

(151.61, 158.98) -> (151.61, 159.06)

Distance:

220.0 -> 220.29

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.76 4.78 1.76
Low resolution limit 91.5 91.63 1.79
Completeness 92.9 100.0 77.6
Multiplicity 18.5 24.5 14.2
I/sigma 14.3 37.3 1.4
Rmerge 0.167 0.087 1.935
CC half 0.997 0.996 0.529
Anomalous completeness 91.3 100.0 75.3
Anomalous multiplicity 10.1 10.1 10.1
Cell 62.11 62.11 183.01 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97922

Sweep:

SWEEP2

Files:

/programs/datagrid/494/TJB7EZP9HAqp_1_###.img

Images:

1 - 180

Beam:

(151.61, 158.98) -> (151.61, 159.06)

Distance:

220.0 -> 220.02

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.77 4.8 1.77
Low resolution limit 61.01 61.04 1.8
Completeness 94.1 100.0 100.0
Multiplicity 18.5 24.5 14.4
I/sigma 14.0 35.2 1.5
Rmerge 0.167 0.088 1.844
CC half 0.997 0.996 0.571
Anomalous completeness 92.8 100.0 99.9
Anomalous multiplicity 10.1 10.1 10.1
Cell 62.11 62.11 183.02 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97922

Sweep:

SWEEP2

Files:

/programs/datagrid/494/TJB7EZP9HAqp_1_###.img

Images:

1 - 180

Beam:

(151.61, 158.98) -> (151.61, 159.04)

Distance:

220.0 -> 220.93

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.73 4.69 1.73
Low resolution limit 60.77 60.81 1.76
Completeness 99.8 100.0 89.9
Multiplicity 19.2 25.6 14.3
I/sigma 12.1 33.6 1.7
Rmerge 0.184 0.09 0.858
CC half 0.996 0.988 0.514
Anomalous completeness 99.5 100.0 90.5
Anomalous multiplicity 10.3 10.3 10.3
Cell 61.874 61.874 182.325 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.