X-Ray Diffraction data from PAK4, source of 5VEF structure

Data DOI: 10.15785/SBGRID/494 | ID: 494

Publication DOI: 10.1016/j.bbapap.2017.10.004

5VEF Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Boggon Laboratory, Yale University School of Medicine

Release Date: Oct. 13, 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/494

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/494 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/494 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/494 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/494 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 494 ; shasum -c files.sha'

Storage requirements: 6.4G

Biological Sample:

PAK4

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24-ID-E

Data Creation Date:

Nov. 4, 2015

Related Datasets:

None


Cite this Dataset

Ha, BHak; Zhang, EY; Boggon, TJ. 2017. "X-Ray Diffraction data for: PAK4. PDB Code 5VEF", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/494.

Download Citation

Dataset Description

2 180 degree sweeps

Project Members

Name Additional Roles Affiliation While Working on the Project
Titus J BoggonData Collector, DepositorYale University
Byung Hak HaData CollectorYale University
Eric Y ZhangData CollectorYale University
Titus BoggonPIYale University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97922

Sweep:

SWEEP2

Files:

/programs/datagrid/494/TJB7EZP9HAqp_1_###.img

Images:

1 - 180

Beam:

(151.61, 158.98) -> (151.61, 159.1)

Distance:

220.0 -> 219.29

Spacegroup:

P 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.87 5.08 1.87
Low resolution limit 61.84 61.88 1.9
Completeness 86.6 99.5 77.2
Multiplicity 4.8 6.5 3.5
I/sigma 10.6 24.6 1.0
Rmerge 0.159 0.054 11.313
CC half 0.99 0.997 0.276
Anomalous completeness 78.4 98.3 72.1
Anomalous multiplicity 2.6 2.6 2.6
Cell 61.842 62.033 182.577 90.0 90.042 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97922

Sweep:

SWEEP2

Files:

/programs/datagrid/494/TJB7EZP9HAqp_1_###.img

Images:

1 - 180

Beam:

(151.61, 158.98) -> (151.61, 159.06)

Distance:

220.0 -> 220.29

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.73 4.7 1.73
Low resolution limit 91.5 91.63 1.76
Completeness 98.4 100.0 85.9
Multiplicity 18.5 23.1 14.3
I/sigma 12.8 35.0 1.1
Rmerge 0.178 0.069 2.388
CC half 0.999 0.999 0.411
Anomalous completeness 97.8 100.0 84.3
Anomalous multiplicity 10.0 10.0 10.0
Cell 62.1 62.1 183.0 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97922

Sweep:

SWEEP2

Files:

/programs/datagrid/494/TJB7EZP9HAqp_1_###.img

Images:

1 - 180

Beam:

(151.61, 158.98) -> (151.61, 159.06)

Distance:

220.0 -> 220.02

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.73 4.7 1.73
Low resolution limit 61.0 61.04 1.76
Completeness 96.3 100.0 85.3
Multiplicity 18.6 23.1 14.3
I/sigma 13.9 39.7 1.1
Rmerge 0.176 0.067 2.467
CC half 0.999 0.999 0.424
Anomalous completeness 95.4 100.0 83.7
Anomalous multiplicity 10.1 10.1 10.1
Cell 62.11 62.11 183.01 90.0 90.0 90.0

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.