Data DOI: 10.15785/SBGRID/493 | ID: 493
Publication DOI: 10.1016/j.bbapap.2017.10.004
5VEE Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Boggon Laboratory, Yale University School of Medicine
Release Date: Oct. 13, 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/493
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/493 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/493 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/493 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/493 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 493 ; shasum -c files.sha'
Storage requirements: 6.4G
Biological Sample:
PAK4
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 24-ID-E
Data Creation Date:
March 10, 2016
Related Datasets:
None
Ha, BHak; Zhang, EY; Boggon, TJ. 2017. "X-Ray Diffraction data for: PAK4. PDB Code 5VEE", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/493.
2 180 degree sweeps
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Titus J Boggon | Data Collector, Depositor | Yale University |
| Byung Hak Ha | Data Collector | Yale University |
| Eric Y Zhang | Data Collector | Yale University |
| Titus Boggon | PI | Yale University School of Medicine |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97919
Sweep:
SWEEP2
Files:
/programs/datagrid/493/TJB14_9_EZqp_1_###.img
Images:
1 - 180
Beam:
(150.56, 158.89) -> (150.56, 158.94)
Distance:
280.0 -> 280.47
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.34 | 6.35 | 2.34 |
| Low resolution limit | 63.15 | 63.18 | 2.38 |
| Completeness | 93.7 | 95.1 | 93.7 |
| Multiplicity | 2.0 | 2.9 | 1.9 |
| I/sigma | 3.6 | 10.2 | 0.4 |
| Rmerge | 0.078 | 0.065 | 1.618 |
| CC half | 0.995 | 0.998 | 0.325 |
| Anomalous completeness | 69.1 | 87.6 | 68.4 |
| Anomalous multiplicity | 1.1 | 1.1 | 1.1 |
| Cell | 63.103 | 63.154 | 184.056 | 89.982 | 89.989 | 89.935 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97919
Sweep:
SWEEP2
Files:
/programs/datagrid/493/TJB14_9_EZqp_1_###.img
Images:
1 - 180
Beam:
(150.56, 158.89) -> (150.56, 158.88)
Distance:
280.0 -> 279.17
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.54 | 6.89 | 2.54 |
| Low resolution limit | 43.39 | 43.39 | 2.58 |
| Completeness | 100.0 | 100.0 | 99.8 |
| Multiplicity | 16.6 | 15.4 | 14.3 |
| I/sigma | 27.6 | 74.0 | 1.7 |
| Rmerge | 0.057 | 0.027 | 1.567 |
| CC half | 1.0 | 1.0 | 0.885 |
| Anomalous completeness | 99.6 | 99.5 | 99.4 |
| Anomalous multiplicity | 9.2 | 9.2 | 9.2 |
| Cell | 63.14 | 63.14 | 184.02 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97919
Sweep:
SWEEP2
Files:
/programs/datagrid/493/TJB14_9_EZqp_1_###.img
Images:
1 - 180
Beam:
(150.56, 158.89) -> (150.56, 158.88)
Distance:
280.0 -> 279.87
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.37 | 6.43 | 2.37 |
| Low resolution limit | 52.06 | 52.07 | 2.41 |
| Completeness | 99.3 | 100.0 | 85.9 |
| Multiplicity | 15.9 | 16.9 | 13.9 |
| I/sigma | 23.2 | 74.0 | 0.6 |
| Rmerge | 0.058 | 0.029 | 3.83 |
| CC half | 1.0 | 1.0 | 0.67 |
| Anomalous completeness | 98.8 | 99.6 | 83.2 |
| Anomalous multiplicity | 8.8 | 8.8 | 8.8 |
| Cell | 63.14 | 63.14 | 184.03 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97919
Sweep:
SWEEP2
Files:
/programs/datagrid/493/TJB14_9_EZqp_1_###.img
Images:
1 - 180
Beam:
(150.56, 158.89) -> (150.56, 158.87)
Distance:
280.0 -> 279.24
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.37 | 6.44 | 2.37 |
| Low resolution limit | 61.12 | 61.14 | 2.42 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 20.8 | 17.5 | 13.9 |
| I/sigma | 14.6 | 31.1 | 0.9 |
| Rmerge | 0.115 | 0.041 | 2.267 |
| CC half | 0.999 | 0.999 | 0.818 |
| Anomalous completeness | 100.0 | 99.6 | 100.0 |
| Anomalous multiplicity | 11.5 | 11.5 | 11.5 |
| Cell | 62.943 | 62.943 | 183.347 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
