X-Ray Diffraction data from PAK4, source of 5VED structure

Data DOI: 10.15785/SBGRID/492 | ID: 492

Publication DOI: 10.1016/j.bbapap.2017.10.004

5VED Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Boggon Laboratory, Yale University School of Medicine

Release Date: 13 Oct 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/492

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/492 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/492 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/492 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/492 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 492 ; shasum -c files.sha'

Storage requirements: 3.2G

Biological Sample:

PAK4

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24-ID-E

Data Creation Date:

4 Nov 2015

Related Datasets:

None


Cite this Dataset

Ha, BHak; Zhang, EY; Boggon, TJ. 2017. "X-Ray Diffraction data for: PAK4. PDB Code 5VED", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/492.

Download Citation

Dataset Description

180 degrees

Project Members

Name Additional Roles Affiliation While Working on the Project
Titus J BoggonData Collector, DepositorYale University
Byung Hak HaData CollectorYale University
Eric` Y ZhangData CollectorYale University
Titus BoggonPIYale University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97922

Sweep:

SWEEP1

Files:

/programs/datagrid/492/TJB7_EZ_P07_1_###.img

Images:

1 - 180

Beam:

(150.76, 158.86) -> (150.76, 158.92)

Distance:

320.0 -> 319.09

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.44 6.62 2.44
Low resolution limit 50.94 50.95 2.48
Completeness 100.0 100.0 100.0
Multiplicity 13.5 11.5 14.3
I/sigma 11.2 29.4 1.5
Rmerge 0.189 0.047 2.057
CC half 0.998 0.999 0.551
Anomalous completeness 99.9 100.0 100.0
Anomalous multiplicity 7.5 7.5 7.5
Cell 62.41 62.41 176.32 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97922

Sweep:

SWEEP1

Files:

/programs/datagrid/492/TJB7_EZ_P07_1_###.img

Images:

1 - 180

Beam:

(150.76, 158.86) -> (150.76, 158.92)

Distance:

320.0 -> 317.55

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.43 6.59 2.43
Low resolution limit 58.77 58.78 2.47
Completeness 100.0 100.0 100.0
Multiplicity 13.5 11.6 14.3
I/sigma 11.1 29.5 1.4
Rmerge 0.191 0.047 2.204
CC half 0.998 0.999 0.544
Anomalous completeness 99.9 100.0 100.0
Anomalous multiplicity 7.5 7.5 7.5
Cell 62.41 62.41 176.3 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97922

Sweep:

SWEEP1

Files:

/programs/datagrid/492/TJB7_EZ_P07_1_###.img

Images:

1 - 180

Beam:

(150.76, 158.86) -> (150.76, 158.91)

Distance:

320.0 -> 318.07

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.26 6.13 2.26
Low resolution limit 61.87 61.89 2.3
Completeness 100.0 100.0 99.3
Multiplicity 13.4 11.8 13.7
I/sigma 6.5 12.9 1.9
Rmerge 0.266 0.085 0.962
CC half 0.987 0.996 0.553
Anomalous completeness 99.9 100.0 99.2
Anomalous multiplicity 7.4 7.4 7.4
Cell 61.867 61.867 174.888 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.