Data DOI: 10.15785/SBGRID/492 | ID: 492
Publication DOI: 10.1016/j.bbapap.2017.10.004
5VED Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Boggon Laboratory, Yale University School of Medicine
Release Date: 13 Oct 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/492
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/492 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/492 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/492 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/492 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 492 ; shasum -c files.sha'
Storage requirements: 3.2G
Biological Sample:
PAK4
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 24-ID-E
Data Creation Date:
4 Nov 2015
Related Datasets:
None
Ha, BHak; Zhang, EY; Boggon, TJ. 2017. "X-Ray Diffraction data for: PAK4. PDB Code 5VED", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/492.
180 degrees
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Titus J Boggon | Data Collector, Depositor | Yale University |
| Byung Hak Ha | Data Collector | Yale University |
| Eric` Y Zhang | Data Collector | Yale University |
| Titus Boggon | PI | Yale University School of Medicine |
none
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97922
Sweep:
SWEEP1
Files:
/programs/datagrid/492/TJB7_EZ_P07_1_###.img
Images:
1 - 180
Beam:
(150.76, 158.86) -> (150.76, 158.92)
Distance:
320.0 -> 319.67
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.4 | 6.51 | 2.4 |
| Low resolution limit | 50.94 | 50.96 | 2.44 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 13.6 | 11.6 | 14.4 |
| I/sigma | 10.8 | 29.2 | 1.3 |
| Rmerge | 0.196 | 0.047 | 2.391 |
| CC half | 0.998 | 0.999 | 0.487 |
| Anomalous completeness | 99.9 | 100.0 | 100.0 |
| Anomalous multiplicity | 7.5 | 7.5 | 7.5 |
| Cell | 62.42 | 62.42 | 176.33 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97922
Sweep:
SWEEP1
Files:
/programs/datagrid/492/TJB7_EZ_P07_1_###.img
Images:
1 - 180
Beam:
(150.76, 158.86) -> (150.76, 158.92)
Distance:
320.0 -> 317.55
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.39 | 6.48 | 2.39 |
| Low resolution limit | 58.77 | 58.78 | 2.43 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 13.6 | 11.6 | 14.3 |
| I/sigma | 10.7 | 29.1 | 1.2 |
| Rmerge | 0.197 | 0.047 | 2.433 |
| CC half | 0.998 | 0.999 | 0.456 |
| Anomalous completeness | 99.9 | 100.0 | 100.0 |
| Anomalous multiplicity | 7.5 | 7.5 | 7.5 |
| Cell | 62.41 | 62.41 | 176.3 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97922
Sweep:
SWEEP1
Files:
/programs/datagrid/492/TJB7_EZ_P07_1_###.img
Images:
1 - 180
Beam:
(150.76, 158.86) -> (150.76, 158.91)
Distance:
320.0 -> 315.85
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.53 | 6.85 | 2.53 |
| Low resolution limit | 50.9 | 50.91 | 2.57 |
| Completeness | 99.6 | 100.0 | 93.4 |
| Multiplicity | 3.6 | 3.6 | 3.6 |
| I/sigma | 4.1 | 7.7 | 1.2 |
| Rmerge | 0.229 | 0.064 | 1.422 |
| CC half | 0.88 | 0.995 | 0.331 |
| Anomalous completeness | 97.9 | 100.0 | 92.6 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 62.239 | 62.296 | 176.091 | 90.0 | 90.175 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
