Data DOI: 10.15785/SBGRID/492 | ID: 492
Publication DOI: 10.1016/j.bbapap.2017.10.004
5VED Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Boggon Laboratory, Yale University School of Medicine
Release Date: Oct. 13, 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/492
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/492 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/492 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/492 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/492 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 492 ; shasum -c files.sha'
Storage requirements: 3.2G
Biological Sample:
PAK4
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 24-ID-E
Data Creation Date:
Nov. 4, 2015
Related Datasets:
None
Ha, BHak; Zhang, EY; Boggon, TJ. 2017. "X-Ray Diffraction data for: PAK4. PDB Code 5VED", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/492.
180 degrees
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Titus J Boggon | Data Collector, Depositor | Yale University |
| Byung Hak Ha | Data Collector | Yale University |
| Eric` Y Zhang | Data Collector | Yale University |
| Titus Boggon | PI | Yale University School of Medicine |
none
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97922
Sweep:
SWEEP1
Files:
/programs/datagrid/492/TJB7_EZ_P07_1_###.img
Images:
1 - 180
Beam:
(150.76, 158.86) -> (150.76, 158.92)
Distance:
320.0 -> 320.15
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.26 | 6.13 | 2.26 |
| Low resolution limit | 50.92 | 50.93 | 2.3 |
| Completeness | 100.0 | 100.0 | 98.8 |
| Multiplicity | 13.6 | 11.7 | 13.7 |
| I/sigma | 9.3 | 28.6 | -0.7 |
| Rmerge | 0.231 | 0.049 | -4.09 |
| CC half | 0.998 | 0.999 | 0.363 |
| Anomalous completeness | 99.4 | 100.0 | 89.2 |
| Anomalous multiplicity | 7.5 | 7.5 | 7.5 |
| Cell | 62.39 | 62.39 | 176.25 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97922
Sweep:
SWEEP1
Files:
/programs/datagrid/492/TJB7_EZ_P07_1_###.img
Images:
1 - 180
Beam:
(150.76, 158.86) -> (150.76, 158.92)
Distance:
320.0 -> 317.64
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.26 | 6.13 | 2.26 |
| Low resolution limit | 58.75 | 58.77 | 2.3 |
| Completeness | 100.0 | 100.0 | 99.3 |
| Multiplicity | 13.6 | 11.7 | 13.8 |
| I/sigma | 9.3 | 28.4 | -0.7 |
| Rmerge | 0.232 | 0.05 | -3.961 |
| CC half | 0.998 | 0.999 | 0.382 |
| Anomalous completeness | 99.4 | 100.0 | 89.9 |
| Anomalous multiplicity | 7.5 | 7.5 | 7.5 |
| Cell | 62.39 | 62.39 | 176.25 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97922
Sweep:
SWEEP1
Files:
/programs/datagrid/492/TJB7_EZ_P07_1_###.img
Images:
1 - 180
Beam:
(150.76, 158.86) -> (150.76, 158.91)
Distance:
320.0 -> 314.14
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.22 | 6.02 | 2.22 |
| Low resolution limit | 61.57 | 61.59 | 2.26 |
| Completeness | 100.0 | 100.0 | 98.2 |
| Multiplicity | 12.4 | 11.5 | 8.0 |
| I/sigma | 5.4 | 32.9 | 0.4 |
| Rmerge | 0.307 | 0.074 | 2.118 |
| CC half | 0.991 | 0.998 | 0.499 |
| Anomalous completeness | 99.5 | 100.0 | 92.5 |
| Anomalous multiplicity | 6.8 | 6.8 | 6.8 |
| Cell | 61.351 | 61.351 | 173.405 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
