Data DOI: 10.15785/SBGRID/491 | ID: 491
5WHM Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Crosson Laboratory, University of Chicago
Release Date: Aug. 29, 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/491
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/491 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/491 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/491 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/491 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 491 ; shasum -c files.sha'
Storage requirements: 3.6G
Biological Sample:
Brucella abortus IclR-family transcription factor (Bab2_0215)
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
19-ID, SBC; APS, Chicago, IL
Data Creation Date:
Feb. 27, 2015
Related Datasets:
None
Babnigg, G; Herrou, J; Joachimiak, A; Kim, Y; Crosson, S. 2017. "X-Ray Diffraction data for: Brucella abortus IclR-family transcription factor (Bab2_0215). PDB Code 5WHM", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/491.
SeMet dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Gyorgy Babnigg | Argonne National Lab | |
| Julien Herrou | University of Chicago | |
| Andrzej Joachimiak | Argonne National Lab | |
| Youngchang Kim | Data Collector | Argonne National Lab |
| Sean Crosson | Depositor, PI | University of Chicago |
This dataset was indexed in space group P21
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97927
Sweep:
SWEEP1
Files:
/programs/datagrid/491/m4h11e.####.img
Images:
1 - 200
Beam:
(154.5, 159.98) -> (154.5, 158.24)
Distance:
300.07 -> 304.51
Spacegroup:
P 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.89 | 7.47 | 2.89 |
| Low resolution limit | 14.21 | 14.21 | 2.94 |
| Completeness | 99.8 | 98.9 | 100.0 |
| Multiplicity | 3.9 | 3.5 | 4.0 |
| I/sigma | 1.0 | 0.6 | 0.9 |
| Rmerge | 0.626 | 0.623 | 0.712 |
| CC half | 0.33 | 0.45 | 0.17 |
| Anomalous completeness | 97.5 | 91.9 | 99.1 |
| Anomalous multiplicity | 2.0 | 2.0 | 2.0 |
| Cell | 74.72 | 113.16 | 84.51 | 90.0 | 116.21 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97927
Sweep:
SWEEP1
Files:
/programs/datagrid/491/m4h11e.####.img
Images:
1 - 200
Beam:
(154.5, 159.98) -> (154.5, 162.47)
Distance:
300.07 -> 300.46
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.88 | 5.1 | 1.88 |
| Low resolution limit | 43.01 | 43.02 | 1.91 |
| Completeness | 97.4 | 98.2 | 78.4 |
| Multiplicity | 3.9 | 3.9 | 2.6 |
| I/sigma | 12.5 | 30.4 | 1.0 |
| Rmerge | 0.047 | 0.03 | 0.862 |
| CC half | 0.997 | 0.994 | 0.426 |
| Anomalous completeness | 92.0 | 90.7 | 63.5 |
| Anomalous multiplicity | 2.0 | 2.0 | 2.0 |
| Cell | 74.15 | 112.52 | 83.66 | 90.0 | 115.86 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97927
Sweep:
SWEEP1
Files:
/programs/datagrid/491/m4h11e.####.img
Images:
1 - 200
Beam:
(154.5, 159.98) -> (154.5, 157.55)
Distance:
300.07 -> 308.34
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 4.18 | 11.25 | 4.18 |
| Low resolution limit | 37.81 | 37.81 | 4.25 |
| Completeness | 97.6 | 98.2 | 87.2 |
| Multiplicity | 2.1 | 2.1 | 2.1 |
| I/sigma | 0.7 | 0.8 | 0.6 |
| Rmerge | 0.891 | 0.791 | 0.697 |
| CC half | 0.283 | 0.125 | 0.176 |
| Anomalous completeness | 88.9 | 92.8 | 78.8 |
| Anomalous multiplicity | 1.1 | 1.1 | 1.1 |
| Cell | 74.474 | 84.293 | 112.73 | 90.0 | 90.0 | 63.784 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
