X-Ray Diffraction data from Brucella abortus IclR-family transcription factor (Bab2_0215), source of 5WHM structure

Data DOI: 10.15785/SBGRID/491 | ID: 491

5WHM Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Crosson Laboratory, University of Chicago

Release Date: Aug. 29, 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/491

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/491 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/491 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/491 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/491 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 491 ; shasum -c files.sha'

Storage requirements: 3.6G

Biological Sample:

Brucella abortus IclR-family transcription factor (Bab2_0215)

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

19-ID, SBC; APS, Chicago, IL

Data Creation Date:

Feb. 27, 2015

Related Datasets:

None


Cite this Dataset

Babnigg, G; Herrou, J; Joachimiak, A; Kim, Y; Crosson, S. 2017. "X-Ray Diffraction data for: Brucella abortus IclR-family transcription factor (Bab2_0215). PDB Code 5WHM", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/491.

Download Citation

Dataset Description

SeMet dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Gyorgy BabniggArgonne National Lab
Julien HerrouUniversity of Chicago
Andrzej JoachimiakArgonne National Lab
Youngchang KimData CollectorArgonne National Lab
Sean CrossonDepositor, PIUniversity of Chicago

Reprocessing Instructions

This dataset was indexed in space group P21

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97927

Sweep:

SWEEP1

Files:

/programs/datagrid/491/m4h11e.####.img

Images:

1 - 200

Beam:

(154.5, 159.98) -> (154.5, 158.24)

Distance:

300.07 -> 304.51

Spacegroup:

P 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.89 7.47 2.89
Low resolution limit 14.21 14.21 2.94
Completeness 99.8 98.9 100.0
Multiplicity 3.9 3.5 4.0
I/sigma 1.0 0.6 0.9
Rmerge 0.626 0.623 0.712
CC half 0.33 0.45 0.17
Anomalous completeness 97.5 91.9 99.1
Anomalous multiplicity 2.0 2.0 2.0
Cell 74.72 113.16 84.51 90.0 116.21 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97927

Sweep:

SWEEP1

Files:

/programs/datagrid/491/m4h11e.####.img

Images:

1 - 200

Beam:

(154.5, 159.98) -> (154.5, 162.47)

Distance:

300.07 -> 300.46

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.88 5.1 1.88
Low resolution limit 43.01 43.02 1.91
Completeness 97.4 98.2 78.4
Multiplicity 3.9 3.9 2.6
I/sigma 12.5 30.4 1.0
Rmerge 0.047 0.03 0.862
CC half 0.997 0.994 0.426
Anomalous completeness 92.0 90.7 63.5
Anomalous multiplicity 2.0 2.0 2.0
Cell 74.15 112.52 83.66 90.0 115.86 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97927

Sweep:

SWEEP1

Files:

/programs/datagrid/491/m4h11e.####.img

Images:

1 - 200

Beam:

(154.5, 159.98) -> (154.5, 157.55)

Distance:

300.07 -> 308.34

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.18 11.25 4.18
Low resolution limit 37.81 37.81 4.25
Completeness 97.6 98.2 87.2
Multiplicity 2.1 2.1 2.1
I/sigma 0.7 0.8 0.6
Rmerge 0.891 0.791 0.697
CC half 0.283 0.125 0.176
Anomalous completeness 88.9 92.8 78.8
Anomalous multiplicity 1.1 1.1 1.1
Cell 74.474 84.293 112.73 90.0 90.0 63.784

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.