Data DOI: 10.15785/SBGRID/491 | ID: 491
5WHM Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Crosson Laboratory, University of Chicago
Release Date: 29 Aug 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/491
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/491 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/491 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/491 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/491 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 491 ; shasum -c files.sha'
Storage requirements: 3.6G
Biological Sample:
Brucella abortus IclR-family transcription factor (Bab2_0215)
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
19-ID, SBC; APS, Chicago, IL
Data Creation Date:
27 Feb 2015
Related Datasets:
None
Babnigg, G; Herrou, J; Joachimiak, A; Kim, Y; Crosson, S. 2017. "X-Ray Diffraction data for: Brucella abortus IclR-family transcription factor (Bab2_0215). PDB Code 5WHM", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/491.
SeMet dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Gyorgy Babnigg | Argonne National Lab | |
| Julien Herrou | University of Chicago | |
| Andrzej Joachimiak | Argonne National Lab | |
| Youngchang Kim | Data Collector | Argonne National Lab |
| Sean Crosson | Depositor, PI | University of Chicago |
This dataset was indexed in space group P21
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97927
Sweep:
SWEEP1
Files:
/programs/datagrid/491/m4h11e.####.img
Images:
1 - 200
Beam:
(154.5, 159.98) -> (154.5, 158.21)
Distance:
300.07 -> 304.5
Spacegroup:
P 21 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.43 | 9.2 | 3.43 |
| Low resolution limit | 27.81 | 27.81 | 3.49 |
| Completeness | 99.7 | 100.0 | 99.7 |
| Multiplicity | 6.7 | 5.1 | 7.5 |
| I/sigma | 1.0 | 0.6 | 1.0 |
| Rmerge | 0.59 | 0.698 | 0.755 |
| CC half | 0.451 | 0.311 | 0.548 |
| Anomalous completeness | 95.5 | 89.2 | 98.6 |
| Anomalous multiplicity | 3.7 | 3.7 | 3.7 |
| Cell | 154.22 | 75.85 | 113.08 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97927
Sweep:
SWEEP1
Files:
/programs/datagrid/491/m4h11e.####.img
Images:
1 - 200
Beam:
(154.5, 159.98) -> (154.5, 162.46)
Distance:
300.07 -> 300.45
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.86 | 5.05 | 1.86 |
| Low resolution limit | 42.9 | 42.91 | 1.89 |
| Completeness | 96.6 | 95.5 | 74.9 |
| Multiplicity | 3.8 | 3.8 | 2.6 |
| I/sigma | 12.3 | 30.4 | 0.9 |
| Rmerge | 0.048 | 0.027 | 0.979 |
| CC half | 0.997 | 0.994 | 0.342 |
| Anomalous completeness | 90.8 | 87.5 | 59.5 |
| Anomalous multiplicity | 2.0 | 2.0 | 2.0 |
| Cell | 74.15 | 112.51 | 83.66 | 90.0 | 115.86 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97927
Sweep:
SWEEP1
Files:
/programs/datagrid/491/m4h11e.####.img
Images:
1 - 200
Beam:
(154.5, 159.98) -> (154.5, 162.46)
Distance:
300.07 -> 300.11
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.83 | 4.97 | 1.83 |
| Low resolution limit | 57.38 | 57.41 | 1.86 |
| Completeness | 95.7 | 100.0 | 69.0 |
| Multiplicity | 3.9 | 4.1 | 2.4 |
| I/sigma | 11.8 | 54.8 | 0.2 |
| Rmerge | 0.059 | 0.052 | 1.498 |
| CC half | 0.987 | 0.952 | 0.3 |
| Anomalous completeness | 91.8 | 99.9 | 52.3 |
| Anomalous multiplicity | 2.0 | 2.0 | 2.0 |
| Cell | 74.109 | 112.51 | 83.664 | 90.0 | 115.821 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
