X-Ray Diffraction data from RSV F B9320 Bound to MEDI8897, source of 5UDD structure

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Data DOI: 10.15785/SBGRID/489 | ID: 489

Publication DOI: 10.1126/scitranslmed.aaj1928

5UDD Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

McLellan Laboratory, University of Texas at Austin

Release Date: Aug. 22, 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/489

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/489 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/489 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/489 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/489 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 489 ; shasum -c files.sha'

Storage requirements: 4.3G

Biological Sample:

RSV F B9320 Bound to MEDI8897

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

19-ID, SBC, APS, Chicago, IL

Data Creation Date:

Nov. 10, 2014

Related Datasets:

None


Cite this Dataset

McLellan, JS. 2017. "X-Ray Diffraction data for: RSV F B9320 Bound to MEDI8897. PDB Code 5UDD", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/489.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Jason S McLellanData Collector, DepositorGeisel School of Medicine at Dartmouth
Jason McLellanPIUniversity of Texas at Austin

Reprocessing Instructions

Beam center, as defined in the header, needs to be corrected to X=153.1 Y=162.6 Processing with iMosflm will require "Reverse direction of spindle rotation" to be checked

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/1.11.4/dials-1.11.4/build/bin/xia2 pipeline=2d /programs/datagrid//489/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.11.4/dials-1.11.4/build/bin/xia2 pipeline=3d /programs/datagrid//489/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.11.4/dials-1.11.4/build/bin/xia2 pipeline=3dii /programs/datagrid//489/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97924

Sweep:

SWEEP1

Files:

/programs/datagrid/489/P6P8_9320_8897_X2.####.img

Images:

1 - 240

Beam:

(154.5, 159.98) -> (154.5, 162.57)

Distance:

546.55 -> 546.61

Spacegroup:

P 31 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.02 10.88 4.02
Low resolution limit 54.43 54.43 4.09
Completeness 100.0 100.0 100.0
Multiplicity 7.5 6.9 7.7
I/sigma 3.7 15.1 0.8
Rmerge 0.542 0.069 2.816
CC half 0.986 0.999 0.299
Anomalous completeness 99.8 99.3 99.9
Anomalous multiplicity 3.9 3.9 3.9
Cell 229.5 229.5 343.24 90.0 90.0 120.0
/programs/x86_64-linux/dials/1.11.4/dials-1.11.4/build/bin/xia2 pipeline=dials /programs/datagrid//489/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.