Data DOI: 10.15785/SBGRID/489 | ID: 489
Publication DOI: 10.1126/scitranslmed.aaj1928
5UDD Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
McLellan Laboratory, University of Texas at Austin
Release Date: 22 Aug 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/489
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/489 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/489 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/489 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/489 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 489 ; shasum -c files.sha'
Storage requirements: 4.3G
Biological Sample:
RSV F B9320 Bound to MEDI8897
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
19-ID, SBC, APS, Chicago, IL
Data Creation Date:
10 Nov 2014
Related Datasets:
None
McLellan, JS. 2017. "X-Ray Diffraction data for: RSV F B9320 Bound to MEDI8897. PDB Code 5UDD", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/489.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Jason S McLellan | Data Collector, Depositor | Geisel School of Medicine at Dartmouth |
| Jason McLellan | PI | University of Texas at Austin |
Beam center, as defined in the header, needs to be corrected to X=153.1 Y=162.6 Processing with iMosflm will require "Reverse direction of spindle rotation" to be checked
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97924
Sweep:
SWEEP1
Files:
/programs/datagrid/489/P6P8_9320_8897_X2.####.img
Images:
1 - 240
Beam:
(154.5, 159.98) -> (154.5, 161.7)
Distance:
546.55 -> 526.79
Spacegroup:
P 3 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.51 | 6.8 | 2.51 |
| Low resolution limit | 38.74 | 38.74 | 2.55 |
| Completeness | 55.8 | 99.8 | 0.5 |
| Multiplicity | 3.9 | 6.5 | 1.1 |
| I/sigma | 0.2 | 1.0 | 0.0 |
| Rmerge | 2.392 | 1.16 | 0.0 |
| CC half | 0.284 | 0.369 | 0.787 |
| Anomalous completeness | 43.8 | 98.6 | 0.0 |
| Anomalous multiplicity | 2.3 | 2.3 | 2.3 |
| Cell | 229.52 | 229.52 | 344.45 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97924
Sweep:
SWEEP1
Files:
/programs/datagrid/489/P6P8_9320_8897_X2.####.img
Images:
1 - 240
Beam:
(154.5, 159.98) -> (154.5, 162.57)
Distance:
546.55 -> 546.64
Spacegroup:
P 31 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.98 | 10.78 | 3.98 |
| Low resolution limit | 54.43 | 54.43 | 4.05 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 7.5 | 6.9 | 7.6 |
| I/sigma | 3.7 | 15.7 | 0.7 |
| Rmerge | 0.56 | 0.073 | 2.876 |
| CC half | 0.985 | 0.998 | 0.289 |
| Anomalous completeness | 99.8 | 99.2 | 99.8 |
| Anomalous multiplicity | 3.9 | 3.9 | 3.9 |
| Cell | 229.5 | 229.5 | 343.24 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97924
Sweep:
SWEEP1
Files:
/programs/datagrid/489/P6P8_9320_8897_X2.####.img
Images:
1 - 240
Beam:
(154.5, 159.98) -> (154.5, 159.53)
Distance:
546.55 -> 543.92
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.61 | 7.09 | 2.61 |
| Low resolution limit | 56.17 | 56.18 | 2.66 |
| Completeness | 40.0 | 72.0 | 0.1 |
| Multiplicity | 1.6 | 1.8 | 1.0 |
| I/sigma | -0.5 | 1.5 | -0.2 |
| Rmerge | -0.499 | 0.088 | 0.0 |
| CC half | 0.156 | 0.29 | 0.0 |
| Anomalous completeness | 25.2 | 58.1 | 0.0 |
| Anomalous multiplicity | 1.0 | 1.0 | 1.0 |
| Cell | 187.241 | 187.45 | 187.08 | 82.072 | 81.999 | 81.873 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
