X-Ray Diffraction data from Crystal Structure of RSV F A2 Bound to MEDI8897, source of 5UDC structure

Data DOI: 10.15785/SBGRID/488 | ID: 488

Publication DOI: 10.1126/scitranslmed.aaj1928

5UDC Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

McLellan Laboratory, University of Texas at Austin

Release Date: Aug. 22, 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/488

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/488 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/488 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/488 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/488 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 488 ; shasum -c files.sha'

Storage requirements: 5.3G

Biological Sample:

Crystal Structure of RSV F A2 Bound to MEDI8897

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

19-ID, SBC, APS, Chicago, IL

Data Creation Date:

July 19, 2014

Related Datasets:

None


Cite this Dataset

McLellan, JS. 2017. "X-Ray Diffraction data for: Crystal Structure of RSV F A2 Bound to MEDI8897. PDB Code 5UDC", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/488.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Jason S McLellanData Collector, DepositorGeisel School of Medicine at Dartmouth
Jason McLellanPIUniversity of Texas at Austin

Reprocessing Instructions

Beam center, as defined in the header, needs to be corrected to X=153.1 Y=162.5. Processing with iMosflm will require "Reverse direction of spindle rotation" to be checked

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/488/F_MEDI_X1_P4P8.####.img

Images:

2 - 300

Beam:

(154.5, 159.98) -> (154.5, 162.52)

Distance:

400.1 -> 399.9

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.47 12.04 4.47
Low resolution limit 42.2 42.2 4.55
Completeness 97.5 89.6 99.3
Multiplicity 3.1 2.9 3.2
I/sigma 21.4 36.7 13.5
Rmerge 0.028 0.02 0.057
CC half 0.998 0.995 0.994
Anomalous completeness 87.1 77.0 91.8
Anomalous multiplicity 1.7 1.7 1.7
Cell 103.88 126.6 162.43 90.0 102.65 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/488/F_MEDI_X1_P4P8.####.img

Images:

2 - 300

Beam:

(154.5, 159.98) -> (154.5, 162.52)

Distance:

400.1 -> 400.05

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.19 8.65 3.19
Low resolution limit 53.69 53.7 3.25
Completeness 98.3 91.7 98.7
Multiplicity 3.1 3.0 3.2
I/sigma 10.2 34.9 0.6
Rmerge 0.058 0.019 1.478
CC half 0.998 0.997 0.289
Anomalous completeness 89.6 80.9 90.9
Anomalous multiplicity 1.7 1.7 1.7
Cell 103.88 126.61 162.43 90.0 102.65 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/488/F_MEDI_X1_P4P8.####.img

Images:

2 - 300

Beam:

(154.5, 159.98) -> (154.5, 162.52)

Distance:

400.1 -> 399.96

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.62 9.81 3.62
Low resolution limit 56.65 56.66 3.68
Completeness 98.8 97.6 94.9
Multiplicity 3.2 3.1 3.2
I/sigma 3.8 5.6 1.9
Rmerge 0.194 0.192 0.424
CC half 0.888 0.85 0.477
Anomalous completeness 93.3 93.9 88.8
Anomalous multiplicity 1.7 1.7 1.7
Cell 103.794 126.493 162.281 90.0 102.64 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.