X-Ray Diffraction data from Mycobacterial glucosylglycerate hydrolase - D182A mutant in complex with mannosylglycerate, source of 5OJ4 structure

Data DOI: 10.15785/SBGRID/473 | ID: 473

Publication DOI: 10.1107/S2052252519005372

5OJ4 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Pereira Laboratory, IBMC/i3S, Universidade do Porto

Release Date: May 3, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/473

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/473 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/473 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/473 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/473 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 473 ; shasum -c files.sha'

Storage requirements: 1.1G

Biological Sample:

Mycobacterial glucosylglycerate hydrolase - D182A mutant in complex with mannosylglycerate

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ESRF ID30A1

Data Creation Date:

Dec. 12, 2015

Related Datasets:

None


Cite this Dataset

Cereija, TB.; Pereira, PJ.B.. 2019. "X-Ray Diffraction data for: Mycobacterial glucosylglycerate hydrolase - D182A mutant in complex with mannosylglycerate. PDB Code 5OJ4", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/473.

Download Citation

Dataset Description

X-Ray Diffraction data from M. hassiacum GgH, source of 5OJ4 structure

Project Members

Name Additional Roles Affiliation While Working on the Project
Pedro J.B. PereiraDepositorIBMC - Instituto de Biologia Molecular e Celular
Tatiana B. CereijaData CollectorIBMC - Instituto de Biologia Molecular e Celular
Pedro PereiraPIUniversidade do Porto

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.966

Sweep:

SWEEP1

Files:

/programs/datagrid/473/GGH01-GGH34_1_####.cbf

Images:

1 - 900

Beam:

(146.86, 129.06) -> (146.86, 129.23)

Distance:

234.92 -> 234.51

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.72 4.67 1.72
Low resolution limit 62.24 62.28 1.75
Completeness 91.7 100.0 57.3
Multiplicity 5.0 5.8 2.9
I/sigma 12.8 34.5 1.1
Rmerge 0.066 0.036 0.82
CC half 0.997 0.992 0.314
Anomalous completeness 84.9 99.6 45.5
Anomalous multiplicity 2.7 2.7 2.7
Cell 159.316 85.292 91.014 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.966

Sweep:

SWEEP1

Files:

/programs/datagrid/473/GGH01-GGH34_1_####.cbf

Images:

1 - 900

Beam:

(146.86, 129.06) -> (146.86, 129.09)

Distance:

234.92 -> 234.54

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.76 4.78 1.76
Low resolution limit 60.02 60.06 1.79
Completeness 99.1 100.0 92.9
Multiplicity 6.6 6.3 5.8
I/sigma 14.9 45.4 1.1
Rmerge 0.059 0.028 1.157
CC half 0.999 0.999 0.549
Anomalous completeness 98.1 99.1 91.3
Anomalous multiplicity 3.4 3.4 3.4
Cell 159.55 85.34 91.12 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.966

Sweep:

SWEEP1

Files:

/programs/datagrid/473/GGH01-GGH34_1_####.cbf

Images:

1 - 900

Beam:

(146.86, 129.06) -> (146.86, 129.1)

Distance:

234.92 -> 234.65

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.76 4.78 1.76
Low resolution limit 85.34 85.44 1.79
Completeness 99.1 100.0 92.9
Multiplicity 6.6 6.2 5.8
I/sigma 14.9 45.4 1.1
Rmerge 0.059 0.028 1.159
CC half 0.999 0.999 0.54
Anomalous completeness 98.1 99.2 91.2
Anomalous multiplicity 3.4 3.4 3.4
Cell 159.56 85.34 91.12 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.966

Sweep:

SWEEP1

Files:

/programs/datagrid/473/GGH01-GGH34_1_####.cbf

Images:

1 - 900

Beam:

(146.86, 129.06) -> (146.86, 129.1)

Distance:

234.92 -> 234.57

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.7 4.61 1.7
Low resolution limit 91.15 91.28 1.73
Completeness 97.7 100.0 80.5
Multiplicity 6.3 6.2 4.5
I/sigma 13.9 40.3 1.1
Rmerge 0.063 0.029 1.024
CC half 0.998 0.994 0.582
Anomalous completeness 96.4 99.9 73.6
Anomalous multiplicity 3.3 3.3 3.3
Cell 159.504 85.316 91.146 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.