X-Ray Diffraction data from Mycobacterial glucosylglycerate hydrolase, source of 5OHC structure

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Data DOI: 10.15785/SBGRID/464 | ID: 464

Publication DOI: 10.1107/S2052252519005372

5OHC Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Pereira Laboratory, IBMC/i3S, Universidade do Porto

Release Date: May 3, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/464

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/464 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/464 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/464 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/464 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 464 ; shasum -c files.sha'

Storage requirements: 2.4G

Biological Sample:

Mycobacterial glucosylglycerate hydrolase

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ESRF ID30A3

Data Creation Date:

Oct. 29, 2016

Related Datasets:

None


Cite this Dataset

Cereija, TB.; Pereira, PJ.B.. 2019. "X-Ray Diffraction data for: Mycobacterial glucosylglycerate hydrolase. PDB Code 5OHC", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/464.

Download Citation

Dataset Description

X-Ray Diffraction data from M. hassiacum GgH, source of 5OHC structure

Project Members

Name Additional Roles Affiliation While Working on the Project
Pedro J.B. PereiraDepositorIBMC - Instituto de Biologia Molecular e Celular
Tatiana B. CereijaData CollectorIBMC - Instituto de Biologia Molecular e Celular
Pedro PereiraPIUniversidade do Porto

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/1.14.12/bin.capsules//xia2 pipeline=2d /programs/datagrid//464/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.14.12/bin.capsules//xia2 pipeline=3d /programs/datagrid//464/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.14.12/bin.capsules//xia2 pipeline=3dii /programs/datagrid//464/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.14.12/bin.capsules//xia2 pipeline=dials /programs/datagrid//464/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9677

Sweep:

SWEEP1

Files:

/programs/datagrid/464/bm1013_w1_1_1_master.h5

Images:

1 - 1200

Beam:

(81.26, 76.55) -> (81.26, 76.6)

Distance:

126.48 -> 126.32

Spacegroup:

P 21 2 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.79 4.86 1.79
Low resolution limit 62.52 62.56 1.82
Completeness 99.6 99.1 99.8
Multiplicity 4.6 4.6 4.8
I/sigma 7.0 42.7 0.1
Rmerge 0.095 0.032 2.647
CC half 0.998 0.999 0.296
Anomalous completeness 95.2 99.0 97.0
Anomalous multiplicity 2.4 2.4 2.4
Cell 85.763 91.397 159.009 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.