X-Ray Diffraction data from Influenza A virus Nucleoprotein in Complex with Inhibitory Nanobody, source of 5TJW structure

Data DOI: 10.15785/SBGRID/450 | ID: 450

5TJW Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Schwartz Laboratory, Massachusetts Institute of Technology

Release Date: June 2, 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/450

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/450 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/450 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/450 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/450 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 450 ; shasum -c files.sha'

Storage requirements: 2.7G

Biological Sample:

Influenza A virus Nucleoprotein in Complex with Inhibitory Nanobody

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24-ID-C

Data Creation Date:

Dec. 14, 2014

Related Datasets:

None


Cite this Dataset

Hanke, L; Knockenhauer, K; Schwartz, T. 2017. "X-Ray Diffraction data for: Influenza A virus Nucleoprotein in Complex with Inhibitory Nanobody. PDB Code 5TJW", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/450.

Download Citation

Dataset Description

native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Thomas SchwartzDepositorMIT
Leo HankeMIT
Kevin KnockenhauerData CollectorMIT
Thomas SchwartzPIMassachusetts Institute of Technology

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9778

Sweep:

SWEEP1

Files:

/programs/datagrid/450/NP_VHH52_2_1_####.cbf

Images:

1 - 450

Beam:

(216.82, 220.59) -> (216.82, 220.65)

Distance:

500.0 -> 500.5

Spacegroup:

H 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.27 8.88 3.27
Low resolution limit 137.8 137.92 3.33
Completeness 94.9 93.9 94.9
Multiplicity 2.5 2.6 2.5
I/sigma 4.7 10.7 1.1
Rmerge 0.159 0.038 0.873
CC half 0.975 0.997 0.332
Anomalous completeness 80.7 86.1 77.7
Anomalous multiplicity 1.4 1.4 1.4
Cell 194.628 194.628 239.301 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9778

Sweep:

SWEEP1

Files:

/programs/datagrid/450/NP_VHH52_2_1_####.cbf

Images:

1 - 450

Beam:

(216.82, 220.59) -> (216.82, 220.54)

Distance:

500.0 -> 496.75

Spacegroup:

P 21 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.56 12.38 4.56
Low resolution limit 97.16 97.19 4.64
Completeness 100.0 100.0 100.0
Multiplicity 9.7 8.0 9.6
I/sigma 27.2 48.4 16.5
Rmerge 0.062 0.03 0.14
CC half 0.999 0.999 0.993
Anomalous completeness 99.9 100.0 100.0
Anomalous multiplicity 5.2 5.2 5.2
Cell 137.41 137.41 137.41 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9778

Sweep:

SWEEP1

Files:

/programs/datagrid/450/NP_VHH52_2_1_####.cbf

Images:

1 - 450

Beam:

(216.82, 220.59) -> (216.82, 220.53)

Distance:

500.0 -> 498.99

Spacegroup:

P 21 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.12 8.47 3.12
Low resolution limit 79.33 79.35 3.17
Completeness 100.0 100.0 99.7
Multiplicity 9.8 8.7 10.3
I/sigma 12.8 47.5 1.1
Rmerge 0.162 0.03 2.42
CC half 0.998 0.999 0.343
Anomalous completeness 99.8 100.0 99.6
Anomalous multiplicity 5.2 5.2 5.2
Cell 137.4 137.4 137.4 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9778

Sweep:

SWEEP1

Files:

/programs/datagrid/450/NP_VHH52_2_1_####.cbf

Images:

1 - 450

Beam:

(216.82, 220.59) -> (216.82, 220.53)

Distance:

500.0 -> 499.39

Spacegroup:

P 21 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.96 8.03 2.96
Low resolution limit 97.19 97.24 3.01
Completeness 100.0 100.0 100.0
Multiplicity 9.7 9.1 10.1
I/sigma 5.8 12.1 1.0
Rmerge 0.251 0.043 2.562
CC half 0.994 0.999 0.34
Anomalous completeness 100.0 100.0 100.0
Anomalous multiplicity 5.1 5.1 5.1
Cell 137.445 137.445 137.445 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.