Data DOI: 10.15785/SBGRID/450 | ID: 450
5TJW Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Schwartz Laboratory, Massachusetts Institute of Technology
Release Date: June 2, 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/450
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/450 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/450 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/450 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/450 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 450 ; shasum -c files.sha'
Storage requirements: 2.7G
Biological Sample:
Influenza A virus Nucleoprotein in Complex with Inhibitory Nanobody
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 24-ID-C
Data Creation Date:
Dec. 14, 2014
Related Datasets:
None
Hanke, L; Knockenhauer, K; Schwartz, T. 2017. "X-Ray Diffraction data for: Influenza A virus Nucleoprotein in Complex with Inhibitory Nanobody. PDB Code 5TJW", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/450.
native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Thomas Schwartz | Depositor | MIT |
| Leo Hanke | MIT | |
| Kevin Knockenhauer | Data Collector | MIT |
| Thomas Schwartz | PI | Massachusetts Institute of Technology |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9778
Sweep:
SWEEP1
Files:
/programs/datagrid/450/NP_VHH52_2_1_####.cbf
Images:
1 - 450
Beam:
(216.82, 220.59) -> (216.82, 220.65)
Distance:
500.0 -> 500.5
Spacegroup:
H 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.27 | 8.88 | 3.27 |
| Low resolution limit | 137.8 | 137.92 | 3.33 |
| Completeness | 94.9 | 93.9 | 94.9 |
| Multiplicity | 2.5 | 2.6 | 2.5 |
| I/sigma | 4.7 | 10.7 | 1.1 |
| Rmerge | 0.159 | 0.038 | 0.873 |
| CC half | 0.975 | 0.997 | 0.332 |
| Anomalous completeness | 80.7 | 86.1 | 77.7 |
| Anomalous multiplicity | 1.4 | 1.4 | 1.4 |
| Cell | 194.628 | 194.628 | 239.301 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9778
Sweep:
SWEEP1
Files:
/programs/datagrid/450/NP_VHH52_2_1_####.cbf
Images:
1 - 450
Beam:
(216.82, 220.59) -> (216.82, 220.54)
Distance:
500.0 -> 496.75
Spacegroup:
P 21 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 4.56 | 12.38 | 4.56 |
| Low resolution limit | 97.16 | 97.19 | 4.64 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 9.7 | 8.0 | 9.6 |
| I/sigma | 27.2 | 48.4 | 16.5 |
| Rmerge | 0.062 | 0.03 | 0.14 |
| CC half | 0.999 | 0.999 | 0.993 |
| Anomalous completeness | 99.9 | 100.0 | 100.0 |
| Anomalous multiplicity | 5.2 | 5.2 | 5.2 |
| Cell | 137.41 | 137.41 | 137.41 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9778
Sweep:
SWEEP1
Files:
/programs/datagrid/450/NP_VHH52_2_1_####.cbf
Images:
1 - 450
Beam:
(216.82, 220.59) -> (216.82, 220.53)
Distance:
500.0 -> 498.99
Spacegroup:
P 21 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.12 | 8.47 | 3.12 |
| Low resolution limit | 79.33 | 79.35 | 3.17 |
| Completeness | 100.0 | 100.0 | 99.7 |
| Multiplicity | 9.8 | 8.7 | 10.3 |
| I/sigma | 12.8 | 47.5 | 1.1 |
| Rmerge | 0.162 | 0.03 | 2.42 |
| CC half | 0.998 | 0.999 | 0.343 |
| Anomalous completeness | 99.8 | 100.0 | 99.6 |
| Anomalous multiplicity | 5.2 | 5.2 | 5.2 |
| Cell | 137.4 | 137.4 | 137.4 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9778
Sweep:
SWEEP1
Files:
/programs/datagrid/450/NP_VHH52_2_1_####.cbf
Images:
1 - 450
Beam:
(216.82, 220.59) -> (216.82, 220.53)
Distance:
500.0 -> 499.39
Spacegroup:
P 21 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.96 | 8.03 | 2.96 |
| Low resolution limit | 97.19 | 97.24 | 3.01 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 9.7 | 9.1 | 10.1 |
| I/sigma | 5.8 | 12.1 | 1.0 |
| Rmerge | 0.251 | 0.043 | 2.562 |
| CC half | 0.994 | 0.999 | 0.34 |
| Anomalous completeness | 100.0 | 100.0 | 100.0 |
| Anomalous multiplicity | 5.1 | 5.1 | 5.1 |
| Cell | 137.445 | 137.445 | 137.445 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
