Data DOI: 10.15785/SBGRID/447 | ID: 447
Publication DOI: 10.1074/jbc.M116.752626
5SXM Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Cosgrove Laboratory, SUNY Upstate Medical University
Release Date: 26 May 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/447
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/447 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/447 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/447 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/447 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 447 ; shasum -c files.sha'
Storage requirements: 2.2G
Biological Sample:
human WDR5 in complex with MLL Win6mer peptide
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
MacCHESS F1
Data Creation Date:
26 Nov 2014
Related Datasets:
None
Alicea-Velazquez, NL; Shinsky, SA; Cosgrove, M. 2017. "X-Ray Diffraction data for: human WDR5 in complex with MLL Win6mer peptide. PDB Code 5SXM", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/447.
Native data set
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Nilda L Alicea-Velazquez | Data Collector, Depositor | SUNY Upstate Medical University |
| Stephen A Shinsky | Data Collector | SUNY Upstate Medical University |
| Michael Cosgrove | PI | SUNY Upstate Medical University |
Data indexed to P31 with HKL2000 at 1.8 A resolution, then rescaled to 2.0 A resolution.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9773
Sweep:
SWEEP1
Files:
/programs/datagrid/447/G78_1_###.img
Images:
1 - 270
Beam:
(137.36, 124.17) -> (137.36, 124.13)
Distance:
250.0 -> 251.51
Spacegroup:
P 31 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.69 | 4.59 | 1.69 |
| Low resolution limit | 46.75 | 46.77 | 1.72 |
| Completeness | 97.4 | 100.0 | 77.1 |
| Multiplicity | 13.1 | 15.0 | 4.9 |
| I/sigma | 13.0 | 41.6 | 0.8 |
| Rmerge | 0.117 | 0.052 | 1.682 |
| CC half | 0.999 | 0.999 | 0.266 |
| Anomalous completeness | 96.3 | 100.0 | 70.9 |
| Anomalous multiplicity | 6.9 | 6.9 | 6.9 |
| Cell | 74.93 | 74.93 | 93.5 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9773
Sweep:
SWEEP1
Files:
/programs/datagrid/447/G78_1_###.img
Images:
1 - 270
Beam:
(137.36, 124.17) -> (137.36, 124.13)
Distance:
250.0 -> 251.63
Spacegroup:
P 31 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.69 | 4.59 | 1.69 |
| Low resolution limit | 46.75 | 46.77 | 1.72 |
| Completeness | 97.4 | 100.0 | 77.1 |
| Multiplicity | 13.1 | 15.0 | 5.0 |
| I/sigma | 13.0 | 41.5 | 0.8 |
| Rmerge | 0.117 | 0.052 | 1.679 |
| CC half | 0.999 | 0.999 | 0.26 |
| Anomalous completeness | 96.3 | 100.0 | 70.9 |
| Anomalous multiplicity | 6.9 | 6.9 | 6.9 |
| Cell | 74.93 | 74.93 | 93.5 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9773
Sweep:
SWEEP1
Files:
/programs/datagrid/447/G78_1_###.img
Images:
1 - 270
Beam:
(137.36, 124.17) -> (137.36, 124.13)
Distance:
250.0 -> 251.7
Spacegroup:
P 31 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.65 | 4.48 | 1.65 |
| Low resolution limit | 65.01 | 65.06 | 1.68 |
| Completeness | 95.4 | 100.0 | 66.7 |
| Multiplicity | 12.8 | 15.5 | 4.2 |
| I/sigma | 8.2 | 35.5 | 0.2 |
| Rmerge | 0.134 | 0.066 | 1.481 |
| CC half | 0.998 | 0.998 | 0.284 |
| Anomalous completeness | 93.9 | 100.0 | 59.5 |
| Anomalous multiplicity | 6.8 | 6.8 | 6.8 |
| Cell | 75.067 | 75.067 | 93.644 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
