Data DOI: 10.15785/SBGRID/446 | ID: 446
Publication DOI: 10.1038/nsmb.3420
5NW5 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Thoma Laboratory, Friedrich Miescher Institute for Biomedical Research
Release Date: June 13, 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/446
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/446 .'
(Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/446 .'
(Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/446 .'
(Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/446 .'
(Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 446 ; shasum -c files.sha'
Storage requirements: 13G
Biological Sample:
Rif1 N-terminal domain (RIF1-NTD) from Saccharomyces cerevisiae in complex with DNA
Dataset Type:
X-Ray Diffraction
Subject Composition:
DNA, Protein
Collection Facility:
Beamline PXII (X10SA), Swiss Light Source, Switzerland
Data Creation Date:
Feb. 26, 2014
Related Datasets:
None
Bunker, RD; Thoma, N. 2017. "X-Ray Diffraction data for: Rif1 N-terminal domain (RIF1-NTD) from Saccharomyces cerevisiae in complex with DNA. PDB Code 5NW5", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/446.
Three sweeps combined for final data set. Sweep 1 collected from a separate position on the crystal to subsequence sweeps. Sweeps 2 and 3 collected in inverse beam mode
Name | Additional Roles | Affiliation While Working on the Project |
---|---|---|
Richard D Bunker | Data Collector, Depositor | Friedrich Miescher Institute for Biomedical Research |
Nicolas Thoma | PI | https://www.fmi.ch/research/groupleader/members/?group=118 |
none
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.91863
Sweep:
SWEEP3
Files:
/programs/datagrid/446/5NW5_3_#####.cbf
Images:
1 - 1800
Beam:
(146.72, 119.02) -> (146.72, 118.99)
Distance:
800.02 -> 800.5
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
ALL | LOW | HIGH | |
---|---|---|---|
High resolution limit | 7.18 | 19.4 | 7.18 |
Low resolution limit | 78.03 | 78.03 | 7.31 |
Completeness | 100.0 | 100.0 | 99.5 |
Multiplicity | 19.0 | 14.1 | 20.9 |
I/sigma | 7.5 | 25.4 | 0.3 |
Rmerge | 0.277 | 0.089 | 5.126 |
CC half | 0.996 | 0.997 | 0.6 |
Anomalous completeness | 100.0 | 100.0 | 99.5 |
Anomalous multiplicity | 10.5 | 10.5 | 10.5 |
Cell | 92.16 | 169.719 | 390.151 | 90.0 | 90.0 | 90.0 |
---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.