X-Ray Diffraction data from Brucella abortus bab1_1186 (DUF1849), source of 6NTR structure

Data DOI: 10.15785/SBGRID/445 | ID: 445

6NTR Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Crosson Laboratory, University of Chicago

Release Date: April 11, 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/445

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/445 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/445 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/445 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/445 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 445 ; shasum -c files.sha'

Storage requirements: 3.9G

Biological Sample:

Brucella abortus bab1_1186 (DUF1849)

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

19-ID, APS, Argonne National Lab

Data Creation Date:

Jan. 12, 2016

Related Datasets:

None


Cite this Dataset

Babnigg, G; Herrou, J; Joachimiak, A; Kim, Y; Crosson, S. 2017. "X-Ray Diffraction data for: Brucella abortus bab1_1186 (DUF1849). PDB Code 6NTR", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/445.

Download Citation

Dataset Description

SeMet Dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Gyorgy BabniggArgonne National Lab
Julien HerrouUniversity of Chicago
Andrzej JoachimiakArgonne National Lab
Youngchang KimData CollectorArgonne National Lab
Sean CrossonDepositor, PIUniversity of Chicago

Reprocessing Instructions

Processed in HKL3000. Twinned. The data were initially processed and scaled P21. Data were finally processed in the lower symmetry space group P1

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97929

Sweep:

SWEEP2

Files:

/programs/datagrid/445/m1f2e.####.img

Images:

25 - 220

Beam:

(154.5, 159.98) -> (154.5, 162.5)

Distance:

329.92 -> 329.96

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.04 5.53 2.04
Low resolution limit 32.5 32.5 2.08
Completeness 97.5 98.6 80.6
Multiplicity 4.2 4.1 2.6
I/sigma 20.8 58.9 0.6
Rmerge 0.04 0.033 0.952
CC half 0.997 0.994 0.569
Anomalous completeness 91.4 90.3 61.5
Anomalous multiplicity 2.2 2.2 2.2
Cell 47.28 84.48 68.77 90.0 101.08 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97929

Sweep:

SWEEP2

Files:

/programs/datagrid/445/m1f2e.####.img

Images:

25 - 220

Beam:

(154.5, 159.98) -> (154.5, 162.49)

Distance:

329.92 -> 329.9

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.04 5.54 2.04
Low resolution limit 52.73 52.75 2.08
Completeness 97.5 98.5 80.6
Multiplicity 4.2 4.2 2.6
I/sigma 11.6 26.4 0.9
Rmerge 0.041 0.034 0.948
CC half 0.997 0.993 0.566
Anomalous completeness 91.3 90.8 61.5
Anomalous multiplicity 2.2 2.2 2.2
Cell 47.28 84.48 68.77 90.0 101.08 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97929

Sweep:

SWEEP2

Files:

/programs/datagrid/445/m1f2e.####.img

Images:

25 - 220

Beam:

(154.5, 159.98) -> (154.5, 162.49)

Distance:

329.92 -> 328.56

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.18 5.92 2.18
Low resolution limit 52.56 52.57 2.22
Completeness 99.6 100.0 91.5
Multiplicity 4.2 4.1 3.5
I/sigma 6.7 13.5 1.3
Rmerge 0.07 0.055 0.345
CC half 0.99 0.982 0.926
Anomalous completeness 97.0 97.9 86.4
Anomalous multiplicity 2.2 2.2 2.2
Cell 47.105 84.17 68.533 90.0 100.942 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.