X-Ray Diffraction data from Brucella abortus Bab1_1612 (DUF1134/COG5400), source of 5UC0 structure

Data DOI: 10.15785/SBGRID/444 | ID: 444

5UC0 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Crosson Laboratory, University of Chicago

Release Date: April 11, 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/444

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/444 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/444 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/444 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/444 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 444 ; shasum -c files.sha'

Storage requirements: 2.6G

Biological Sample:

Brucella abortus Bab1_1612 (DUF1134/COG5400)

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

19-ID, APS, Argonne National Lab

Data Creation Date:

Jan. 12, 2016

Related Datasets:

None


Cite this Dataset

Babnigg, G; Herrou, J; Joachimiak, A; Kim, Y; Crosson, S. 2017. "X-Ray Diffraction data for: Brucella abortus Bab1_1612 (DUF1134/COG5400). PDB Code 5UC0", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/444.

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Dataset Description

SeMet dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Gyorgy BabniggArgonne National Lab
Julien HerrouUniversity of Chicago
Andrzej JoachimiakArgonne National Lab
Youngchang KimData CollectorArgonne National Lab
Sean CrossonDepositor, PIUniversity of Chicago

Reprocessing Instructions

Processed in HKL3000; indexed in P63.

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97929

Sweep:

SWEEP1

Files:

/programs/datagrid/444/m2b5g-2.####.img

Images:

1 - 144

Beam:

(154.5, 159.98) -> (154.5, 160.19)

Distance:

230.0 -> 229.78

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.41 6.54 2.41
Low resolution limit 60.12 60.14 2.45
Completeness 87.2 83.7 91.4
Multiplicity 1.6 1.7 1.6
I/sigma 0.3 0.3 0.1
Rmerge 2.175 1.589 2.056
CC half -0.005 -0.007 -0.001
Anomalous completeness 49.3 61.3 52.1
Anomalous multiplicity 1.0 1.0 1.0
Cell 66.381 87.205 107.076 107.166 94.657 111.932

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97929

Sweep:

SWEEP1

Files:

/programs/datagrid/444/m2b5g-2.####.img

Images:

1 - 144

Beam:

(154.5, 159.98) -> (154.5, 162.31)

Distance:

230.0 -> 230.39

Spacegroup:

P 63 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.58 4.29 1.58
Low resolution limit 32.67 32.67 1.61
Completeness 98.5 100.0 84.9
Multiplicity 16.5 15.2 12.7
I/sigma 26.7 75.3 1.1
Rmerge 0.054 0.025 2.09
CC half 0.999 0.999 0.445
Anomalous completeness 98.7 99.9 85.6
Anomalous multiplicity 8.8 8.8 8.8
Cell 113.16 113.16 64.32 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97929

Sweep:

SWEEP1

Files:

/programs/datagrid/444/m2b5g-2.####.img

Images:

1 - 144

Beam:

(154.5, 159.98) -> (154.5, 162.32)

Distance:

230.0 -> 230.31

Spacegroup:

P 63 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.58 4.29 1.58
Low resolution limit 53.77 53.8 1.61
Completeness 98.5 100.0 84.9
Multiplicity 16.5 15.2 12.7
I/sigma 26.7 75.1 1.1
Rmerge 0.054 0.025 2.091
CC half 1.0 0.999 0.438
Anomalous completeness 98.7 99.9 85.6
Anomalous multiplicity 8.8 8.8 8.8
Cell 113.16 113.16 64.32 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97929

Sweep:

SWEEP1

Files:

/programs/datagrid/444/m2b5g-2.####.img

Images:

1 - 144

Beam:

(154.5, 159.98) -> (154.5, 162.32)

Distance:

230.0 -> 230.26

Spacegroup:

P 63 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.6 4.34 1.6
Low resolution limit 53.76 53.79 1.63
Completeness 98.9 100.0 89.6
Multiplicity 16.6 15.5 12.9
I/sigma 23.0 68.6 1.3
Rmerge 0.06 0.031 1.845
CC half 0.999 0.999 0.551
Anomalous completeness 99.1 100.0 88.9
Anomalous multiplicity 8.9 8.9 8.9
Cell 113.159 113.159 64.292 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.