X-Ray Diffraction data from Brucella abortus Bab1_1612 (DUF1134/COG5400), source of 5UC0 structure

Data DOI: 10.15785/SBGRID/444 | ID: 444

5UC0 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Crosson Laboratory, University of Chicago

Release Date: 11 Apr 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/444

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/444 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/444 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/444 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/444 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 444 ; shasum -c files.sha'

Storage requirements: 2.6G

Biological Sample:

Brucella abortus Bab1_1612 (DUF1134/COG5400)

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

19-ID, APS, Argonne National Lab

Data Creation Date:

12 Jan 2016

Related Datasets:

None


Cite this Dataset

Babnigg, G; Herrou, J; Joachimiak, A; Kim, Y; Crosson, S. 2017. "X-Ray Diffraction data for: Brucella abortus Bab1_1612 (DUF1134/COG5400). PDB Code 5UC0", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/444.

Download Citation

Dataset Description

SeMet dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Gyorgy BabniggArgonne National Lab
Julien HerrouUniversity of Chicago
Andrzej JoachimiakArgonne National Lab
Youngchang KimData CollectorArgonne National Lab
Sean CrossonDepositor, PIUniversity of Chicago

Reprocessing Instructions

Processed in HKL3000; indexed in P63.

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97929

Sweep:

SWEEP1

Files:

/programs/datagrid/444/m2b5g-2.####.img

Images:

1 - 144

Beam:

(154.5, 159.98) -> (154.5, 160.19)

Distance:

230.0 -> 229.78

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.39 3.77 1.39
Low resolution limit 60.12 60.18 1.41
Completeness 68.8 82.6 14.6
Multiplicity 1.6 1.6 1.4
I/sigma 0.3 0.8 0.0
Rmerge 4.758 1.075 -4.437
CC half 0.005 -0.01 0.002
Anomalous completeness 35.8 49.7 5.1
Anomalous multiplicity 1.0 1.0 1.0
Cell 66.381 87.205 107.076 107.166 94.657 111.932

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97929

Sweep:

SWEEP1

Files:

/programs/datagrid/444/m2b5g-2.####.img

Images:

1 - 144

Beam:

(154.5, 159.98) -> (154.5, 162.31)

Distance:

230.0 -> 230.39

Spacegroup:

P 63 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.6 4.34 1.6
Low resolution limit 32.67 32.67 1.63
Completeness 99.1 100.0 92.8
Multiplicity 16.7 15.2 13.0
I/sigma 27.5 75.4 1.3
Rmerge 0.053 0.025 1.799
CC half 1.0 1.0 0.486
Anomalous completeness 99.3 99.9 93.4
Anomalous multiplicity 8.9 8.9 8.9
Cell 113.16 113.16 64.32 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97929

Sweep:

SWEEP1

Files:

/programs/datagrid/444/m2b5g-2.####.img

Images:

1 - 144

Beam:

(154.5, 159.98) -> (154.5, 162.32)

Distance:

230.0 -> 230.31

Spacegroup:

P 63 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.59 4.32 1.59
Low resolution limit 53.77 53.8 1.62
Completeness 98.8 100.0 88.6
Multiplicity 16.6 15.2 12.8
I/sigma 27.1 75.1 1.2
Rmerge 0.053 0.025 1.924
CC half 1.0 0.999 0.461
Anomalous completeness 99.0 99.9 89.5
Anomalous multiplicity 8.9 8.9 8.9
Cell 113.16 113.16 64.32 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97929

Sweep:

SWEEP1

Files:

/programs/datagrid/444/m2b5g-2.####.img

Images:

1 - 144

Beam:

(154.5, 159.98) -> (154.5, 162.45)

Distance:

230.0 -> 230.01

Spacegroup:

C 2 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.01 5.46 2.01
Low resolution limit 48.92 48.93 2.05
Completeness 96.6 91.1 77.7
Multiplicity 5.3 5.3 5.1
I/sigma 2.4 4.2 0.8
Rmerge 0.445 0.415 0.652
CC half 0.841 0.845 0.561
Anomalous completeness 93.8 86.5 77.3
Anomalous multiplicity 2.8 2.8 2.8
Cell 113.025 195.376 64.196 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.