X-Ray Diffraction data from PAK4 F461V with PAKtide-T, source of 4JDJ structure

Data DOI: 10.15785/SBGRID/440 | ID: 440

Publication DOI: 10.1016/j.molcel.2013.11.013

4JDJ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Boggon Laboratory, Yale University School of Medicine

Release Date: March 28, 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/440

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/440 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/440 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/440 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/440 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 440 ; shasum -c files.sha'

Storage requirements: 2.1G

Biological Sample:

PAK4 F461V with PAKtide-T

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

NSLS X25

Data Creation Date:

Jan. 10, 2011

Related Datasets:

None


Cite this Dataset

Ha, BHak; Boggon, TJ. 2017. "X-Ray Diffraction data for: PAK4 F461V with PAKtide-T. PDB Code 4JDJ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/440.

Download Citation

Dataset Description

X-ray diffraction

Project Members

Name Additional Roles Affiliation While Working on the Project
Titus J BoggonDepositorYale University
Byung Hak HaData CollectorYale University
Titus BoggonPIYale University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.1

Sweep:

SWEEP1

Files:

/programs/datagrid/440/5p2_4_#####.cbf

Images:

1 - 360

Beam:

(224.46, 221.02) -> (224.46, 219.83)

Distance:

400.0 -> 399.53

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.11 5.73 2.11
Low resolution limit 61.76 61.78 2.15
Completeness 100.0 100.0 100.0
Multiplicity 10.6 10.0 6.6
I/sigma 12.2 32.1 1.3
Rmerge 0.124 0.048 1.303
CC half 0.999 0.999 0.283
Anomalous completeness 99.8 100.0 97.1
Anomalous multiplicity 5.8 5.8 5.8
Cell 61.756 61.756 181.681 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.1

Sweep:

SWEEP1

Files:

/programs/datagrid/440/5p2_4_#####.cbf

Images:

1 - 360

Beam:

(224.46, 221.02) -> (224.46, 218.88)

Distance:

400.0 -> 400.37

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.14 5.81 2.14
Low resolution limit 58.55 58.57 2.18
Completeness 100.0 100.0 100.0
Multiplicity 12.1 10.7 9.0
I/sigma 17.1 52.8 1.1
Rmerge 0.091 0.031 1.759
CC half 1.0 1.0 0.362
Anomalous completeness 99.9 99.9 99.9
Anomalous multiplicity 6.7 6.7 6.7
Cell 61.84 61.84 181.79 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.1

Sweep:

SWEEP1

Files:

/programs/datagrid/440/5p2_4_#####.cbf

Images:

1 - 360

Beam:

(224.46, 221.02) -> (224.46, 218.9)

Distance:

400.0 -> 400.2

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.15 5.83 2.15
Low resolution limit 58.55 58.57 2.19
Completeness 100.0 100.0 100.0
Multiplicity 12.2 10.7 9.5
I/sigma 17.3 53.0 1.1
Rmerge 0.091 0.031 1.828
CC half 1.0 1.0 0.353
Anomalous completeness 99.9 100.0 99.9
Anomalous multiplicity 6.7 6.7 6.7
Cell 61.84 61.84 181.79 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.1

Sweep:

SWEEP1

Files:

/programs/datagrid/440/5p2_4_#####.cbf

Images:

1 - 360

Beam:

(224.46, 221.02) -> (224.46, 218.88)

Distance:

400.0 -> 400.31

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.08 5.64 2.08
Low resolution limit 61.94 61.97 2.12
Completeness 100.0 100.0 97.8
Multiplicity 11.3 10.7 6.5
I/sigma 15.3 43.5 1.1
Rmerge 0.092 0.034 1.386
CC half 0.999 1.0 0.477
Anomalous completeness 99.8 100.0 96.6
Anomalous multiplicity 6.2 6.2 6.2
Cell 61.94 61.94 182.101 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.