Data DOI: 10.15785/SBGRID/426 | ID: 426
Publication DOI: 10.1038/ncomms14158
5TP3 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
McLellan Laboratory, University of Texas at Austin
Release Date: 3 Mar 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/426
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/426 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/426 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/426 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/426 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 426 ; shasum -c files.sha'
Storage requirements: 6.4G
Biological Sample:
Single-Domain Antibody F-VHH-4
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
19-ID, SBC, APS, Chicago, IL
Data Creation Date:
3 Nov 2015
Related Datasets:
None
Wrapp, D; McLellan, J. 2017. "X-Ray Diffraction data for: Single-Domain Antibody F-VHH-4. PDB Code 5TP3", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/426.
Crystal structure of the RSV-neutralizing single-domain antibody F-VHH-4
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Daniel Wrapp | Data Collector, Depositor | Dartmouth College |
| Jason McLellan | PI | University of Texas at Austin |
Beam center needs to be corrected to X=153.3 Y=161.1 Processing with iMosflm will require "Reverse direction of spindle rotation" to be checked.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97929
Sweep:
SWEEP1
Files:
/programs/datagrid/426/Nb4_X2.####.img
Images:
1 - 360
Beam:
(154.5, 159.98) -> (154.5, 161.16)
Distance:
274.39 -> 272.62
Spacegroup:
P 4 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.79 | 4.85 | 1.79 |
| Low resolution limit | 30.01 | 30.01 | 1.82 |
| Completeness | 100.0 | 99.8 | 100.0 |
| Multiplicity | 13.0 | 11.5 | 8.4 |
| I/sigma | 14.0 | 27.3 | 1.2 |
| Rmerge | 0.099 | 0.066 | 1.917 |
| CC half | 0.998 | 0.997 | 0.323 |
| Anomalous completeness | 100.0 | 100.0 | 100.0 |
| Anomalous multiplicity | 7.2 | 7.2 | 7.2 |
| Cell | 47.81 | 47.81 | 150.05 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97929
Sweep:
SWEEP1
Files:
/programs/datagrid/426/Nb4_X2.####.img
Images:
1 - 360
Beam:
(154.5, 159.98) -> (154.5, 161.16)
Distance:
274.39 -> 273.93
Spacegroup:
P 4 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.79 | 4.86 | 1.79 |
| Low resolution limit | 40.32 | 40.33 | 1.82 |
| Completeness | 100.0 | 99.6 | 100.0 |
| Multiplicity | 13.0 | 11.5 | 8.4 |
| I/sigma | 14.0 | 27.2 | 1.2 |
| Rmerge | 0.099 | 0.066 | 1.92 |
| CC half | 0.998 | 0.998 | 0.324 |
| Anomalous completeness | 100.0 | 100.0 | 100.0 |
| Anomalous multiplicity | 7.2 | 7.2 | 7.2 |
| Cell | 47.81 | 47.81 | 150.04 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97929
Sweep:
SWEEP1
Files:
/programs/datagrid/426/Nb4_X2.####.img
Images:
1 - 360
Beam:
(154.5, 159.98) -> (154.5, 161.17)
Distance:
274.39 -> 272.03
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.79 | 4.84 | 1.79 |
| Low resolution limit | 47.6 | 47.61 | 1.82 |
| Completeness | 100.0 | 100.0 | 99.8 |
| Multiplicity | 13.2 | 12.0 | 8.4 |
| I/sigma | 6.7 | 33.0 | 0.1 |
| Rmerge | 0.126 | 0.076 | 7.449 |
| CC half | 0.997 | 0.995 | 0.319 |
| Anomalous completeness | 100.0 | 100.0 | 99.6 |
| Anomalous multiplicity | 7.3 | 7.3 | 7.3 |
| Cell | 47.597 | 47.597 | 149.293 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
