X-Ray Diffraction data from VHH-4 in Complex with Prefusion RSV F, source of 5TOJ structure

Data DOI: 10.15785/SBGRID/425 | ID: 425

Publication DOI: 10.1038/ncomms14158

5TOJ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

McLellan Laboratory, University of Texas at Austin

Release Date: 3 Mar 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/425

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/425 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/425 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/425 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/425 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 425 ; shasum -c files.sha'

Storage requirements: 7.6G

Biological Sample:

VHH-4 in Complex with Prefusion RSV F

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

23-1ID, GM-CA, APS, Chicago, IL

Data Creation Date:

21 Aug 2015

Related Datasets:

None


Cite this Dataset

Gilman, MS.A.; McLellan, J. 2017. "X-Ray Diffraction data for: VHH-4 in Complex with Prefusion RSV F. PDB Code 5TOJ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/425.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Morgan S.A. GilmanData Collector, DepositorGeisel School of Medicine at Dartmouth College
Jason McLellanPIUniversity of Texas at Austin

Reprocessing Instructions

X beam=149.8 Y beam=150.2

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0332

Sweep:

SWEEP1

Files:

/programs/datagrid/425/N4_X3_P5P6_3.#####

Images:

1 - 240

Beam:

(150.29, 150.22) -> (150.29, 150.39)

Distance:

450.5 -> 450.21

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.89 10.55 3.89
Low resolution limit 76.75 76.77 3.96
Completeness 88.8 85.0 90.6
Multiplicity 2.9 2.9 2.8
I/sigma 1.3 1.8 1.0
Rmerge 0.48 0.413 0.528
CC half 0.828 0.854 0.638
Anomalous completeness 79.7 81.6 79.2
Anomalous multiplicity 1.5 1.5 1.5
Cell 172.705 300.083 153.505 90.0 90.324 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0332

Sweep:

SWEEP1

Files:

/programs/datagrid/425/N4_X3_P5P6_3.#####

Images:

1 - 240

Beam:

(150.29, 150.22) -> (150.29, 150.28)

Distance:

450.5 -> 451.43

Spacegroup:

P 31 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.34 9.05 3.34
Low resolution limit 50.12 50.13 3.4
Completeness 99.9 100.0 99.8
Multiplicity 7.5 6.7 7.6
I/sigma 11.6 35.7 1.2
Rmerge 0.127 0.034 1.754
CC half 0.998 0.998 0.574
Anomalous completeness 99.8 99.8 99.8
Anomalous multiplicity 3.9 3.9 3.9
Cell 173.62 173.62 153.98 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0332

Sweep:

SWEEP1

Files:

/programs/datagrid/425/N4_X3_P5P6_3.#####

Images:

1 - 240

Beam:

(150.29, 150.22) -> (150.29, 150.27)

Distance:

450.5 -> 451.05

Spacegroup:

P 31 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.35 9.08 3.35
Low resolution limit 53.31 53.32 3.41
Completeness 99.9 100.0 99.7
Multiplicity 7.5 6.7 7.7
I/sigma 11.7 35.6 1.3
Rmerge 0.126 0.034 1.692
CC half 0.998 0.999 0.56
Anomalous completeness 99.8 99.8 99.8
Anomalous multiplicity 3.9 3.9 3.9
Cell 173.61 173.61 153.99 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0332

Sweep:

SWEEP1

Files:

/programs/datagrid/425/N4_X3_P5P6_3.#####

Images:

1 - 240

Beam:

(150.29, 150.22) -> (150.29, 150.36)

Distance:

450.5 -> 450.09

Spacegroup:

P 31 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.29 8.91 3.29
Low resolution limit 57.4 57.4 3.34
Completeness 99.7 100.0 93.3
Multiplicity 7.5 7.0 7.5
I/sigma 7.8 22.9 1.1
Rmerge 0.143 0.041 1.937
CC half 0.996 0.995 0.673
Anomalous completeness 99.6 100.0 93.1
Anomalous multiplicity 3.9 3.9 3.9
Cell 173.161 173.161 153.324 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.