X-Ray Diffraction data from IL-2 complex with Fab, source of 5UTZ structure

Data DOI: 10.15785/SBGRID/424 | ID: 424

Publication DOI: 10.1038/s41591-018-0070-2

5UTZ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Garcia Laboratory, Stanford University

Release Date: 3 Jul 2018

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/424

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/424 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/424 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/424 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/424 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 424 ; shasum -c files.sha'

Biological Sample:

IL-2 complex with Fab

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ALS 8.2.1

Data Creation Date:

11 May 2015

Related Datasets:

None


Cite this Dataset

Jude, KM; Garcia, KC; Garcia, K. 2018. "X-Ray Diffraction data for: IL-2 complex with Fab. PDB Code 5UTZ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/424.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin M JudeData Collector, DepositorHoward Hughes Medical Institute
K C GarciaStanford University/Howard Hughes Medical Institute
K. Christopher GarciaPIStanford University

Reprocessing Instructions

data processed with XDS

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.99987

Sweep:

SWEEP1

Files:

/programs/datagrid/424/E13_10_###.img

Images:

1 - 157

Beam:

(154.9, 163.1) -> (154.9, 163.1)

Distance:

390.0 -> 391.56

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.76 7.49 2.76
Low resolution limit 86.48 86.52 2.81
Completeness 99.4 98.2 99.9
Multiplicity 3.1 3.2 3.2
I/sigma 5.3 11.6 1.0
Rmerge 0.149 0.043 0.805
CC half 0.976 0.996 0.521
Anomalous completeness 94.4 95.3 97.2
Anomalous multiplicity 1.6 1.6 1.6
Cell 86.393 145.878 107.877 90.0 95.478 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.99987

Sweep:

SWEEP1

Files:

/programs/datagrid/424/E13_10_###.img

Images:

1 - 157

Beam:

(154.9, 163.1) -> (154.9, 163.01)

Distance:

390.0 -> 388.96

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.76 7.49 2.76
Low resolution limit 86.42 86.46 2.81
Completeness 98.9 96.2 99.9
Multiplicity 3.3 3.2 3.3
I/sigma 8.1 22.1 1.2
Rmerge 0.108 0.031 0.806
CC half 0.989 0.997 0.536
Anomalous completeness 92.4 88.1 98.1
Anomalous multiplicity 1.7 1.7 1.7
Cell 86.27 146.2 107.63 90.0 95.43 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.99987

Sweep:

SWEEP1

Files:

/programs/datagrid/424/E13_10_###.img

Images:

1 - 157

Beam:

(154.9, 163.1) -> (154.9, 163.0)

Distance:

390.0 -> 391.21

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.75 7.46 2.75
Low resolution limit 73.09 73.12 2.8
Completeness 98.9 96.1 100.0
Multiplicity 3.3 3.2 3.3
I/sigma 8.1 22.1 1.1
Rmerge 0.109 0.031 0.833
CC half 0.989 0.997 0.501
Anomalous completeness 92.4 88.0 98.2
Anomalous multiplicity 1.7 1.7 1.7
Cell 86.26 146.18 107.62 90.0 95.43 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.99987

Sweep:

SWEEP1

Files:

/programs/datagrid/424/E13_10_###.img

Images:

1 - 157

Beam:

(154.9, 163.1) -> (154.9, 163.03)

Distance:

390.0 -> 387.11

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.75 7.45 2.75
Low resolution limit 84.96 85.0 2.79
Completeness 98.5 98.0 81.8
Multiplicity 3.3 3.3 3.3
I/sigma 4.0 9.0 0.8
Rmerge 0.157 0.046 0.604
CC half 0.979 0.997 0.694
Anomalous completeness 95.0 95.4 80.5
Anomalous multiplicity 1.7 1.7 1.7
Cell 85.348 144.523 106.586 90.0 95.491 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.