X-Ray Diffraction data from IL-2 complex with Fab, source of 5UTZ structure

Data DOI: 10.15785/SBGRID/424 | ID: 424

Publication DOI: 10.1038/s41591-018-0070-2

5UTZ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Garcia Laboratory, Stanford University

Release Date: July 3, 2018

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/424

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/424 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/424 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/424 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/424 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 424 ; shasum -c files.sha'

Biological Sample:

IL-2 complex with Fab

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ALS 8.2.1

Data Creation Date:

May 11, 2015

Related Datasets:

None


Cite this Dataset

Jude, KM; Garcia, KC; Garcia, K. 2018. "X-Ray Diffraction data for: IL-2 complex with Fab. PDB Code 5UTZ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/424.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin M JudeData Collector, DepositorHoward Hughes Medical Institute
K C GarciaStanford University/Howard Hughes Medical Institute
K. Christopher GarciaPIStanford University

Reprocessing Instructions

data processed with XDS

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.99987

Sweep:

SWEEP1

Files:

/programs/datagrid/424/E13_10_###.img

Images:

1 - 157

Beam:

(154.9, 163.1) -> (154.9, 163.0)

Distance:

390.0 -> 389.96

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.62 7.11 2.62
Low resolution limit 86.46 86.51 2.67
Completeness 99.1 96.6 99.9
Multiplicity 3.2 3.2 3.0
I/sigma 7.1 21.1 0.7
Rmerge 0.124 0.033 1.308
CC half 0.988 0.997 0.252
Anomalous completeness 92.7 87.9 89.3
Anomalous multiplicity 1.7 1.7 1.7
Cell 86.3 146.26 107.68 90.0 95.43 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.99987

Sweep:

SWEEP1

Files:

/programs/datagrid/424/E13_10_###.img

Images:

1 - 157

Beam:

(154.9, 163.1) -> (154.9, 163.0)

Distance:

390.0 -> 391.2

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.62 7.11 2.62
Low resolution limit 74.09 74.12 2.67
Completeness 99.1 96.5 99.9
Multiplicity 3.2 3.2 3.0
I/sigma 7.1 21.1 0.7
Rmerge 0.124 0.033 1.343
CC half 0.988 0.997 0.242
Anomalous completeness 92.7 87.4 89.6
Anomalous multiplicity 1.7 1.7 1.7
Cell 86.31 146.27 107.69 90.0 95.42 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.99987

Sweep:

SWEEP1

Files:

/programs/datagrid/424/E13_10_###.img

Images:

1 - 157

Beam:

(154.9, 163.1) -> (154.9, 163.01)

Distance:

390.0 -> 389.69

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.63 7.15 2.63
Low resolution limit 85.9 85.94 2.68
Completeness 99.4 98.4 95.0
Multiplicity 3.4 3.4 3.2
I/sigma 5.9 30.6 0.2
Rmerge 0.218 0.064 2.379
CC half 0.898 0.988 0.131
Anomalous completeness 97.0 96.4 91.1
Anomalous multiplicity 1.7 1.7 1.7
Cell 85.716 145.216 107.031 90.0 95.542 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.