Data DOI: 10.15785/SBGRID/422 | ID: 422
Publication DOI: 10.1038/NATURE22306
5UN6 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Garcia Laboratory, Stanford University
Release Date: 7 Nov 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/422
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/422 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/422 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/422 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/422 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 422 ; shasum -c files.sha'
Storage requirements: 3.2G
Biological Sample:
Frizzled-8 complex with designed Wnt agonist
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
ALS 8.2.2
Data Creation Date:
21 Sep 2013
Related Datasets:
None
Jude, KM; Garcia, KC; Janda, CY; Garcia, K. 2017. "X-Ray Diffraction data for: Frizzled-8 complex with designed Wnt agonist. PDB Code 5UN6", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/422.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin M Jude | Depositor | Howard Hughes Medical Institute |
| K. C Garcia | Stanford University/Howard Hughes Medical Institute | |
| Claudia Y Janda | Data Collector | Stanford University |
| K. Christopher Garcia | PI | Stanford University |
processed with XDS
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.99997
Sweep:
SWEEP1
Files:
/programs/datagrid/422/A1_3_###.img
Images:
1 - 180
Beam:
(155.02, 163.45) -> (155.02, 163.06)
Distance:
450.0 -> 449.69
Spacegroup:
P 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.9 | 7.87 | 2.9 |
| Low resolution limit | 88.08 | 88.12 | 2.95 |
| Completeness | 98.3 | 93.3 | 96.2 |
| Multiplicity | 3.5 | 3.2 | 2.9 |
| I/sigma | 7.9 | 25.5 | 0.7 |
| Rmerge | 0.116 | 0.025 | 2.054 |
| CC half | 0.996 | 0.999 | 0.335 |
| Anomalous completeness | 93.9 | 85.7 | 88.4 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 116.4 | 36.44 | 125.52 | 90.0 | 93.74 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.99997
Sweep:
SWEEP1
Files:
/programs/datagrid/422/A1_3_###.img
Images:
1 - 180
Beam:
(155.02, 163.45) -> (155.02, 163.07)
Distance:
450.0 -> 449.32
Spacegroup:
P 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.9 | 7.87 | 2.9 |
| Low resolution limit | 88.08 | 88.12 | 2.95 |
| Completeness | 98.3 | 93.3 | 96.2 |
| Multiplicity | 3.5 | 3.2 | 2.9 |
| I/sigma | 7.9 | 25.6 | 0.7 |
| Rmerge | 0.116 | 0.025 | 2.055 |
| CC half | 0.996 | 0.999 | 0.34 |
| Anomalous completeness | 93.9 | 85.7 | 88.4 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 116.4 | 36.44 | 125.52 | 90.0 | 93.74 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.99997
Sweep:
SWEEP1
Files:
/programs/datagrid/422/A1_3_###.img
Images:
1 - 180
Beam:
(155.02, 163.45) -> (155.02, 163.07)
Distance:
450.0 -> 443.87
Spacegroup:
P 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.98 | 8.09 | 2.98 |
| Low resolution limit | 115.66 | 115.75 | 3.03 |
| Completeness | 99.9 | 100.0 | 98.8 |
| Multiplicity | 3.7 | 3.3 | 3.6 |
| I/sigma | 8.3 | 41.6 | 0.6 |
| Rmerge | 0.127 | 0.035 | 3.132 |
| CC half | 0.995 | 0.997 | 0.266 |
| Anomalous completeness | 99.5 | 99.7 | 98.5 |
| Anomalous multiplicity | 2.0 | 2.0 | 2.0 |
| Cell | 115.924 | 36.279 | 125.044 | 90.0 | 93.843 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
