Data DOI: 10.15785/SBGRID/421 | ID: 421
Publication DOI: 10.1016/j.neuron.2016.08.022
5KVM Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Arac-Ozkan Laboratory, University of Chicago
Release Date: 31 Jan 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/421
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/421 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/421 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/421 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/421 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 421 ; shasum -c files.sha'
Storage requirements: 5.7G
Biological Sample:
Extracellular region of mouse GPR56/ADGRG1 in complex with FN3 monobody
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
23-ID-B, GM/CA, APS, Chicago, IL
Data Creation Date:
13 Aug 2014
Related Datasets:
None
Salzman, GSimo; Araç-Özkan, D; Ding, C; Koide, S; Araç-Ozkan, D. 2017. "X-Ray Diffraction data for: Extracellular region of mouse GPR56/ADGRG1 in complex with FN3 monobody. PDB Code 5KVM", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/421.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Gabriel Simo Salzman | Data Collector, Depositor | Student |
| Demet Araç-Özkan | Assistant Professor | |
| Chen Ding | Data Collector | Student |
| Shohei Koide | Professor | |
| Demet Araç-Ozkan | PI | University of Chicago |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03322
Sweep:
SWEEP1
Files:
/programs/datagrid/421/E13_1.####
Images:
1 - 180
Beam:
(149.93, 150.51) -> (149.93, 150.51)
Distance:
275.0 -> 274.35
Spacegroup:
P 61
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.25 | 6.11 | 2.25 |
| Low resolution limit | 59.72 | 59.74 | 2.29 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 5.7 | 5.5 | 5.7 |
| I/sigma | 10.5 | 28.9 | 0.8 |
| Rmerge | 0.071 | 0.042 | 1.814 |
| CC half | 0.998 | 0.996 | 0.261 |
| Anomalous completeness | 99.2 | 99.4 | 99.2 |
| Anomalous multiplicity | 2.9 | 2.9 | 2.9 |
| Cell | 120.35 | 120.35 | 72.86 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03322
Sweep:
SWEEP1
Files:
/programs/datagrid/421/E13_1.####
Images:
1 - 180
Beam:
(149.93, 150.51) -> (149.93, 150.51)
Distance:
275.0 -> 274.26
Spacegroup:
P 61
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.25 | 6.11 | 2.25 |
| Low resolution limit | 59.72 | 59.74 | 2.29 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 5.7 | 5.5 | 5.7 |
| I/sigma | 10.5 | 28.9 | 0.8 |
| Rmerge | 0.071 | 0.042 | 1.813 |
| CC half | 0.998 | 0.996 | 0.27 |
| Anomalous completeness | 99.2 | 99.4 | 99.2 |
| Anomalous multiplicity | 2.9 | 2.9 | 2.9 |
| Cell | 120.35 | 120.35 | 72.86 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03322
Sweep:
SWEEP1
Files:
/programs/datagrid/421/E13_1.####
Images:
1 - 180
Beam:
(149.93, 150.51) -> (149.93, 150.59)
Distance:
275.0 -> 274.47
Spacegroup:
P 61
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.18 | 5.92 | 2.18 |
| Low resolution limit | 104.3 | 104.42 | 2.22 |
| Completeness | 100.0 | 100.0 | 99.6 |
| Multiplicity | 5.7 | 5.6 | 5.7 |
| I/sigma | 12.1 | 42.2 | 0.6 |
| Rmerge | 0.092 | 0.046 | 1.432 |
| CC half | 0.992 | 0.996 | 0.399 |
| Anomalous completeness | 100.0 | 100.0 | 99.8 |
| Anomalous multiplicity | 2.9 | 2.9 | 2.9 |
| Cell | 120.432 | 120.432 | 72.894 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
