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X-Ray Diffraction data from Extracellular region of mouse GPR56/ADGRG1 in complex with FN3 monobody, source of 5KVM structure

Data DOI: 10.15785/SBGRID/421 | ID: 421

Publication DOI: 10.1016/j.neuron.2016.08.022

5KVM Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Arac-Ozkan Laboratory, University of Chicago

Release Date: Jan. 31, 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/421

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/421 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/421 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/421 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/421 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 421 ; shasum -c files.sha'

Storage requirements: 5.7G

Biological Sample:

Extracellular region of mouse GPR56/ADGRG1 in complex with FN3 monobody

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

23-ID-B, GM/CA, APS, Chicago, IL

Data Creation Date:

Aug. 13, 2014

Related Datasets:

None


Cite this Dataset

Salzman, GSimo; Araç-Özkan, D; Ding, C; Koide, S; Araç-Ozkan, D. 2017. "X-Ray Diffraction data for: Extracellular region of mouse GPR56/ADGRG1 in complex with FN3 monobody. PDB Code 5KVM", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/421.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Gabriel Simo SalzmanData Collector, DepositorStudent
Demet Araç-ÖzkanAssistant Professor
Chen DingData CollectorStudent
Shohei KoideProfessor
Demet Araç-OzkanPIUniversity of Chicago

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.03322

Sweep:

SWEEP1

Files:

/programs/datagrid/421/E13_1.####

Images:

1 - 180

Beam:

(149.93, 150.51) -> (149.93, 150.6)

Distance:

275.0 -> 274.6

Spacegroup:

P 61

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.27 6.16 2.27
Low resolution limit 60.25 60.27 2.31
Completeness 100.0 100.0 100.0
Multiplicity 5.6 5.5 5.6
I/sigma 9.5 24.2 1.5
Rmerge 0.086 0.046 0.953
CC half 0.997 0.996 0.268
Anomalous completeness 100.0 100.0 100.0
Anomalous multiplicity 2.9 2.9 2.9
Cell 120.5 120.5 72.851 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.03322

Sweep:

SWEEP1

Files:

/programs/datagrid/421/E13_1.####

Images:

1 - 180

Beam:

(149.93, 150.51) -> (149.93, 150.51)

Distance:

275.0 -> 274.49

Spacegroup:

P 61

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.34 6.35 2.34
Low resolution limit 59.72 59.74 2.38
Completeness 99.6 100.0 99.7
Multiplicity 5.7 5.5 5.7
I/sigma 11.5 29.0 1.1
Rmerge 0.068 0.043 1.248
CC half 0.997 0.996 0.413
Anomalous completeness 98.7 99.4 98.9
Anomalous multiplicity 2.9 2.9 2.9
Cell 120.35 120.35 72.86 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.03322

Sweep:

SWEEP1

Files:

/programs/datagrid/421/E13_1.####

Images:

1 - 180

Beam:

(149.93, 150.51) -> (149.93, 150.51)

Distance:

275.0 -> 274.26

Spacegroup:

P 61

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.35 6.38 2.35
Low resolution limit 59.72 59.73 2.39
Completeness 99.6 100.0 99.8
Multiplicity 5.7 5.5 5.7
I/sigma 11.7 29.0 1.2
Rmerge 0.067 0.043 1.193
CC half 0.998 0.996 0.433
Anomalous completeness 98.7 99.4 99.3
Anomalous multiplicity 2.9 2.9 2.9
Cell 120.35 120.35 72.86 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.03322

Sweep:

SWEEP1

Files:

/programs/datagrid/421/E13_1.####

Images:

1 - 180

Beam:

(149.93, 150.51) -> (149.93, 150.59)

Distance:

275.0 -> 274.43

Spacegroup:

P 61

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.32 6.3 2.32
Low resolution limit 72.9 72.93 2.36
Completeness 100.0 100.0 100.0
Multiplicity 5.7 5.5 5.7
I/sigma 9.8 24.1 1.2
Rmerge 0.073 0.044 1.127
CC half 0.997 0.995 0.583
Anomalous completeness 100.0 100.0 100.0
Anomalous multiplicity 2.9 2.9 2.9
Cell 120.426 120.426 72.897 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.