Data DOI: 10.15785/SBGRID/418 | ID: 418
Publication DOI: 10.1016/j.str.2016.11.004
5KWR Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Ozkan Laboratory, University of Chicago
Release Date: 17 Jan 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/418
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/418 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/418 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/418 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/418 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 418 ; shasum -c files.sha'
Storage requirements: 3.8G
Biological Sample:
Rat Cerebellin-1
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Beamline 23-ID-D, GM/CA, APS, Chicago, IL
Data Creation Date:
30 Nov 2015
Related Datasets:
None
Cheng , S; Ozkan, E. 2017. "X-Ray Diffraction data for: Rat Cerebellin-1. PDB Code 5KWR", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/418.
Rat Cerebellin-1, N-terminal domain degraded in the crystallization drops, resulting in the C1q-domain-only trimers.
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Shouqiang Cheng | Data Collector | University of Chicago |
| Engin Ozkan | Data Collector, Depositor, PI | University of Chicago |
Processed by XDS, all parameters are correctly saved in the image header, including the beam center values (ORGX= 1260.0, ORGY= 1284.0).
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03321
Sweep:
SWEEP1
Files:
/programs/datagrid/418/B12_7_#####.cbf
Images:
1 - 650
Beam:
(220.85, 216.72) -> (220.85, 216.91)
Distance:
380.0 -> 375.61
Spacegroup:
P 6
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.69 | 4.59 | 1.69 |
| Low resolution limit | 41.21 | 41.22 | 1.72 |
| Completeness | 94.9 | 99.9 | 66.8 |
| Multiplicity | 5.9 | 6.8 | 2.4 |
| I/sigma | 19.6 | 50.4 | 0.7 |
| Rmerge | 0.036 | 0.023 | 1.247 |
| CC half | 1.0 | 0.999 | 0.431 |
| Anomalous completeness | 83.1 | 97.2 | 35.5 |
| Anomalous multiplicity | 3.2 | 3.2 | 3.2 |
| Cell | 82.75 | 82.75 | 50.37 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03321
Sweep:
SWEEP1
Files:
/programs/datagrid/418/B12_7_#####.cbf
Images:
1 - 650
Beam:
(220.85, 216.72) -> (220.85, 216.89)
Distance:
380.0 -> 376.74
Spacegroup:
P 6
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.68 | 4.56 | 1.68 |
| Low resolution limit | 41.21 | 41.22 | 1.71 |
| Completeness | 94.3 | 99.9 | 63.3 |
| Multiplicity | 5.9 | 6.8 | 2.3 |
| I/sigma | 19.4 | 50.1 | 0.6 |
| Rmerge | 0.036 | 0.024 | 1.283 |
| CC half | 1.0 | 0.999 | 0.361 |
| Anomalous completeness | 82.2 | 97.2 | 32.3 |
| Anomalous multiplicity | 3.2 | 3.2 | 3.2 |
| Cell | 82.75 | 82.75 | 50.37 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03321
Sweep:
SWEEP1
Files:
/programs/datagrid/418/B12_7_#####.cbf
Images:
1 - 650
Beam:
(220.85, 216.72) -> (220.85, 216.89)
Distance:
380.0 -> 375.75
Spacegroup:
P 6
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.69 | 4.58 | 1.69 |
| Low resolution limit | 71.8 | 71.86 | 1.72 |
| Completeness | 94.6 | 100.0 | 62.8 |
| Multiplicity | 6.0 | 7.0 | 2.3 |
| I/sigma | 16.0 | 74.7 | 0.2 |
| Rmerge | 0.043 | 0.025 | 1.3 |
| CC half | 0.999 | 0.999 | 0.188 |
| Anomalous completeness | 83.0 | 97.9 | 32.2 |
| Anomalous multiplicity | 3.3 | 3.3 | 3.3 |
| Cell | 82.905 | 82.905 | 50.373 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
