X-Ray Diffraction data from Engineered Interferon lambda in complex with IFN-lambdaR1 and IL10Rbeta, source of 5T5W structure

Data DOI: 10.15785/SBGRID/416 | ID: 416

Publication DOI: 10.1016/j.immuni.2017.02.017

5T5W Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Garcia Laboratory, Stanford University

Release Date: Nov. 7, 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/416

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/416 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/416 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/416 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/416 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 416 ; shasum -c files.sha'

Storage requirements: 5.3G

Biological Sample:

Engineered Interferon lambda in complex with IFN-lambdaR1 and IL10Rbeta

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

beamline 12-2, SSRL

Data Creation Date:

Feb. 28, 2016

Related Datasets:

None


Cite this Dataset

Jude, KM; Mendoza, JL; Garcia, K. 2017. "X-Ray Diffraction data for: Engineered Interferon lambda in complex with IFN-lambdaR1 and IL10Rbeta. PDB Code 5T5W", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/416.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin M JudeDepositorHoward Hughes Medical Institute
Juan L MendozaData CollectorStanford University
K. Christopher GarciaPIStanford University

Reprocessing Instructions

data processed with XDS

Processing Bundle

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/416/IFNternaA7_2_#####.cbf

Images:

1 - 900

Beam:

(217.32, 211.82) -> (217.32, 211.78)

Distance:

500.0 -> 502.3

Spacegroup:

P 31 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.09 8.37 3.09
Low resolution limit 49.01 49.02 3.14
Completeness 100.0 100.0 100.0
Multiplicity 9.6 8.3 10.3
I/sigma 8.4 23.2 0.6
Rmerge 0.157 0.062 3.093
CC half 0.998 0.997 0.317
Anomalous completeness 99.8 99.4 100.0
Anomalous multiplicity 5.1 5.1 5.1
Cell 105.93 105.93 129.28 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/416/IFNternaA7_2_#####.cbf

Images:

1 - 900

Beam:

(217.32, 211.82) -> (217.32, 211.8)

Distance:

500.0 -> 502.54

Spacegroup:

P 31 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.07 8.32 3.07
Low resolution limit 49.01 49.01 3.12
Completeness 100.0 100.0 100.0
Multiplicity 9.6 8.3 10.3
I/sigma 8.3 23.1 0.7
Rmerge 0.159 0.062 3.172
CC half 0.997 0.997 0.323
Anomalous completeness 99.8 99.4 100.0
Anomalous multiplicity 5.1 5.1 5.1
Cell 105.92 105.92 129.28 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/416/IFNternaA7_2_#####.cbf

Images:

1 - 900

Beam:

(217.32, 211.82) -> (217.32, 211.84)

Distance:

500.0 -> 501.05

Spacegroup:

P 31 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.85 7.73 2.85
Low resolution limit 91.51 91.56 2.9
Completeness 99.9 100.0 95.6
Multiplicity 9.8 9.0 10.3
I/sigma 4.3 29.7 0.1
Rmerge 0.206 0.077 10.024
CC half 0.772 0.633 0.296
Anomalous completeness 99.7 99.9 95.2
Anomalous multiplicity 5.2 5.2 5.2
Cell 105.669 105.669 128.975 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.