X-Ray Diffraction data from TREM2 ectodomain, source of 5ELI structure

Data DOI: 10.15785/SBGRID/415 | ID: 415

Publication DOI: 10.7554/eLife.20391

5ELI Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Brett Laboratory, Washington U. School of Medicine

Release Date: 6 Jan 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/415

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/415 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/415 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/415 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/415 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 415 ; shasum -c files.sha'

Storage requirements: 2.2G

Biological Sample:

TREM2 ectodomain

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 19-ID

Data Creation Date:

1 Jul 2012

Related Datasets:

None


Cite this Dataset

Brett, TJ ; Brett, T. 2017. "X-Ray Diffraction data for: TREM2 ectodomain. PDB Code 5ELI", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/415.

Download Citation

Dataset Description

native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Thomas J BrettData Collector, DepositorWashington University School of Medicine
Tom BrettPIWashington U. School of Medicine

Reprocessing Instructions

Used HKL2000

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97926

Sweep:

SWEEP1

Files:

/programs/datagrid/415/tjb_trem2_9.####.img

Images:

1 - 120

Beam:

(154.78, 160.27) -> (154.78, 159.61)

Distance:

249.94 -> 244.66

Spacegroup:

P 6 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.39 9.15 3.39
Low resolution limit 34.31 34.31 3.45
Completeness 100.0 100.0 100.0
Multiplicity 12.0 7.6 14.3
I/sigma 2.5 2.9 1.3
Rmerge 0.625 0.545 1.114
CC half 0.651 0.516 0.336
Anomalous completeness 100.0 99.7 100.0
Anomalous multiplicity 6.7 6.7 6.7
Cell 121.16 121.16 176.95 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97926

Sweep:

SWEEP1

Files:

/programs/datagrid/415/tjb_trem2_9.####.img

Images:

1 - 120

Beam:

(154.78, 160.27) -> (154.78, 159.61)

Distance:

249.94 -> 246.92

Spacegroup:

P 6 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.6 9.74 3.6
Low resolution limit 45.45 45.46 3.66
Completeness 100.0 100.0 99.6
Multiplicity 11.6 7.3 13.9
I/sigma 2.7 2.8 1.6
Rmerge 0.612 0.549 0.953
CC half 0.685 0.456 0.583
Anomalous completeness 99.9 99.3 99.5
Anomalous multiplicity 6.5 6.5 6.5
Cell 122.04 122.04 178.21 90.0 90.0 120.0

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.