Data DOI: 10.15785/SBGRID/415 | ID: 415
Publication DOI: 10.7554/eLife.20391
5ELI Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Brett Laboratory, Washington U. School of Medicine
Release Date: 6 Jan 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/415
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/415 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/415 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/415 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/415 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 415 ; shasum -c files.sha'
Storage requirements: 2.2G
Biological Sample:
TREM2 ectodomain
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 19-ID
Data Creation Date:
1 Jul 2012
Related Datasets:
None
Brett, TJ ; Brett, T. 2017. "X-Ray Diffraction data for: TREM2 ectodomain. PDB Code 5ELI", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/415.
native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Thomas J Brett | Data Collector, Depositor | Washington University School of Medicine |
| Tom Brett | PI | Washington U. School of Medicine |
Used HKL2000
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97926
Sweep:
SWEEP1
Files:
/programs/datagrid/415/tjb_trem2_9.####.img
Images:
1 - 120
Beam:
(154.78, 160.27) -> (154.78, 159.61)
Distance:
249.94 -> 244.11
Spacegroup:
P 6 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.33 | 3.62 | 1.33 |
| Low resolution limit | 33.85 | 33.86 | 1.36 |
| Completeness | 71.5 | 99.8 | 6.4 |
| Multiplicity | 10.6 | 11.8 | 1.1 |
| I/sigma | 0.1 | 2.8 | 0.0 |
| Rmerge | 1.789 | 0.619 | 4.375 |
| CC half | 0.75 | 0.717 | -0.202 |
| Anomalous completeness | 64.3 | 99.6 | 0.4 |
| Anomalous multiplicity | 5.8 | 5.8 | 5.8 |
| Cell | 121.29 | 121.29 | 177.12 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97926
Sweep:
SWEEP1
Files:
/programs/datagrid/415/tjb_trem2_9.####.img
Images:
1 - 120
Beam:
(154.78, 160.27) -> (154.78, 163.05)
Distance:
249.94 -> 250.31
Spacegroup:
C 2 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.11 | 8.42 | 3.11 |
| Low resolution limit | 42.29 | 42.3 | 3.16 |
| Completeness | 99.7 | 98.1 | 99.9 |
| Multiplicity | 4.9 | 4.5 | 5.0 |
| I/sigma | 11.6 | 42.1 | 0.7 |
| Rmerge | 0.104 | 0.019 | 1.942 |
| CC half | 0.998 | 0.999 | 0.27 |
| Anomalous completeness | 97.5 | 94.0 | 98.6 |
| Anomalous multiplicity | 2.6 | 2.6 | 2.6 |
| Cell | 125.73 | 217.7 | 183.59 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Reprocessing failed.
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
