X-Ray Diffraction data from RctB-155-483, source of 5UBF structure

Data DOI: 10.15785/SBGRID/414 | ID: 414

Publication DOI: 10.1093/nar/gkw1288

5UBF Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Jeruzalmi Laboratory, City College of New York

Release Date: Jan. 6, 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/414

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/414 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/414 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/414 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/414 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 414 ; shasum -c files.sha'

Storage requirements: 5.9G

Biological Sample:

RctB-155-483

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS beamline 24-ID-C

Data Creation Date:

July 23, 2014

Related Datasets:

None


Cite this Dataset

Orlova, N; Waldor, MK.; Jeruzalmi, D. 2017. "X-Ray Diffraction data for: RctB-155-483. PDB Code 5UBF", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/414.

Download Citation

Dataset Description

x-ray diffraction dataset, SeMet labeled protein, wavelength 0.9792

Project Members

Name Additional Roles Affiliation While Working on the Project
Natalia OrlovaData Collector, DepositorThe City College of New York
David JeruzalmiThe City College of New York
Matthew K. WaldorHarvard Medical School
David JeruzalmiPICity College of New York

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/414/RS033-43f-_1_####.cbf

Images:

1 - 1000

Beam:

(217.18, 220.68) -> (217.18, 220.8)

Distance:

400.0 -> 399.9

Spacegroup:

H 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.42 6.57 2.42
Low resolution limit 64.11 64.13 2.46
Completeness 99.6 98.9 99.8
Multiplicity 5.3 5.5 5.5
I/sigma 11.0 29.5 1.0
Rmerge 0.056 0.037 1.64
CC half 0.995 0.993 0.332
Anomalous completeness 98.2 97.8 98.6
Anomalous multiplicity 2.7 2.7 2.7
Cell 128.221 128.221 127.686 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/414/RS033-43f-_1_####.cbf

Images:

1 - 1000

Beam:

(217.18, 220.68) -> (217.18, 220.7)

Distance:

400.0 -> 400.43

Spacegroup:

H 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.51 6.81 2.51
Low resolution limit 64.17 64.19 2.55
Completeness 99.8 99.5 99.9
Multiplicity 5.7 5.6 5.9
I/sigma 16.8 39.5 1.0
Rmerge 0.042 0.03 1.637
CC half 0.989 0.983 0.401
Anomalous completeness 97.4 95.6 99.2
Anomalous multiplicity 2.9 2.9 2.9
Cell 128.34 128.34 127.66 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/414/RS033-43f-_1_####.cbf

Images:

1 - 1000

Beam:

(217.18, 220.68) -> (217.18, 220.69)

Distance:

400.0 -> 399.95

Spacegroup:

H 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.89 7.84 2.89
Low resolution limit 64.17 64.19 2.94
Completeness 99.7 99.3 99.5
Multiplicity 5.7 5.5 6.1
I/sigma 24.1 40.5 5.8
Rmerge 0.037 0.029 0.27
CC half 0.988 0.979 0.96
Anomalous completeness 96.8 95.8 98.5
Anomalous multiplicity 2.9 2.9 2.9
Cell 128.34 128.34 127.66 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/414/RS033-43f-_1_####.cbf

Images:

1 - 1000

Beam:

(217.18, 220.68) -> (217.18, 220.69)

Distance:

400.0 -> 400.25

Spacegroup:

H 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.54 6.89 2.54
Low resolution limit 55.41 55.42 2.58
Completeness 99.8 99.3 99.9
Multiplicity 5.7 5.8 5.8
I/sigma 14.7 38.4 1.0
Rmerge 0.049 0.034 0.977
CC half 0.997 0.996 0.595
Anomalous completeness 99.2 98.6 99.0
Anomalous multiplicity 2.9 2.9 2.9
Cell 128.51 128.51 127.777 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.