Data DOI: 10.15785/SBGRID/414 | ID: 414
Publication DOI: 10.1093/nar/gkw1288
5UBF Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Jeruzalmi Laboratory, City College of New York
Release Date: Jan. 6, 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/414
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/414 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/414 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/414 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/414 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 414 ; shasum -c files.sha'
Storage requirements: 5.9G
Biological Sample:
RctB-155-483
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS beamline 24-ID-C
Data Creation Date:
July 23, 2014
Related Datasets:
None
Orlova, N; Waldor, MK.; Jeruzalmi, D. 2017. "X-Ray Diffraction data for: RctB-155-483. PDB Code 5UBF", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/414.
x-ray diffraction dataset, SeMet labeled protein, wavelength 0.9792
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Natalia Orlova | Data Collector, Depositor | The City College of New York |
| David Jeruzalmi | The City College of New York | |
| Matthew K. Waldor | Harvard Medical School | |
| David Jeruzalmi | PI | City College of New York |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9792
Sweep:
SWEEP1
Files:
/programs/datagrid/414/RS033-43f-_1_####.cbf
Images:
1 - 1000
Beam:
(217.18, 220.68) -> (217.18, 220.8)
Distance:
400.0 -> 399.9
Spacegroup:
H 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.42 | 6.57 | 2.42 |
| Low resolution limit | 64.11 | 64.13 | 2.46 |
| Completeness | 99.6 | 98.9 | 99.8 |
| Multiplicity | 5.3 | 5.5 | 5.5 |
| I/sigma | 11.0 | 29.5 | 1.0 |
| Rmerge | 0.056 | 0.037 | 1.64 |
| CC half | 0.995 | 0.993 | 0.332 |
| Anomalous completeness | 98.2 | 97.8 | 98.6 |
| Anomalous multiplicity | 2.7 | 2.7 | 2.7 |
| Cell | 128.221 | 128.221 | 127.686 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9792
Sweep:
SWEEP1
Files:
/programs/datagrid/414/RS033-43f-_1_####.cbf
Images:
1 - 1000
Beam:
(217.18, 220.68) -> (217.18, 220.7)
Distance:
400.0 -> 400.43
Spacegroup:
H 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.51 | 6.81 | 2.51 |
| Low resolution limit | 64.17 | 64.19 | 2.55 |
| Completeness | 99.8 | 99.5 | 99.9 |
| Multiplicity | 5.7 | 5.6 | 5.9 |
| I/sigma | 16.8 | 39.5 | 1.0 |
| Rmerge | 0.042 | 0.03 | 1.637 |
| CC half | 0.989 | 0.983 | 0.401 |
| Anomalous completeness | 97.4 | 95.6 | 99.2 |
| Anomalous multiplicity | 2.9 | 2.9 | 2.9 |
| Cell | 128.34 | 128.34 | 127.66 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9792
Sweep:
SWEEP1
Files:
/programs/datagrid/414/RS033-43f-_1_####.cbf
Images:
1 - 1000
Beam:
(217.18, 220.68) -> (217.18, 220.69)
Distance:
400.0 -> 399.95
Spacegroup:
H 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.89 | 7.84 | 2.89 |
| Low resolution limit | 64.17 | 64.19 | 2.94 |
| Completeness | 99.7 | 99.3 | 99.5 |
| Multiplicity | 5.7 | 5.5 | 6.1 |
| I/sigma | 24.1 | 40.5 | 5.8 |
| Rmerge | 0.037 | 0.029 | 0.27 |
| CC half | 0.988 | 0.979 | 0.96 |
| Anomalous completeness | 96.8 | 95.8 | 98.5 |
| Anomalous multiplicity | 2.9 | 2.9 | 2.9 |
| Cell | 128.34 | 128.34 | 127.66 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9792
Sweep:
SWEEP1
Files:
/programs/datagrid/414/RS033-43f-_1_####.cbf
Images:
1 - 1000
Beam:
(217.18, 220.68) -> (217.18, 220.69)
Distance:
400.0 -> 400.25
Spacegroup:
H 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.54 | 6.89 | 2.54 |
| Low resolution limit | 55.41 | 55.42 | 2.58 |
| Completeness | 99.8 | 99.3 | 99.9 |
| Multiplicity | 5.7 | 5.8 | 5.8 |
| I/sigma | 14.7 | 38.4 | 1.0 |
| Rmerge | 0.049 | 0.034 | 0.977 |
| CC half | 0.997 | 0.996 | 0.595 |
| Anomalous completeness | 99.2 | 98.6 | 99.0 |
| Anomalous multiplicity | 2.9 | 2.9 | 2.9 |
| Cell | 128.51 | 128.51 | 127.777 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
