X-Ray Diffraction data from RctB-1-124-L48M, source of 5UBD structure

Data DOI: 10.15785/SBGRID/413 | ID: 413

Publication DOI: 10.1093/nar/gkw1288

5UBD Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Jeruzalmi Laboratory, City College of New York

Release Date: Jan. 6, 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/413

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/413 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/413 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/413 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/413 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 413 ; shasum -c files.sha'

Storage requirements: 12G

Biological Sample:

RctB-1-124-L48M

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

SSRL BL14-1

Data Creation Date:

June 5, 2015

Related Datasets:

None


Cite this Dataset

Orlova, N; Ivashkiv, O; Waldor, MK.; Jeruzalmi, D. 2017. "X-Ray Diffraction data for: RctB-1-124-L48M. PDB Code 5UBD", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/413.

Download Citation

Dataset Description

x-ray diffraction dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Natalia OrlovaData Collector, DepositorThe City College of New York
Olha IvashkivThe City College of New York
David JeruzalmiThe City College of New York
Matthew K. WaldorHarvard Medical School
David JeruzalmiPICity College of New York

Reprocessing Instructions

def.site file is uploaded with the dataset

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97907

Sweep:

SWEEP1

Files:

/programs/datagrid/413/R17-27_1_#####.mccd

Images:

1 - 360

Beam:

(162.5, 162.5) -> (162.5, 162.54)

Distance:

300.0 -> 299.87

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.78 4.83 1.78
Low resolution limit 34.18 34.18 1.81
Completeness 85.0 97.0 40.0
Multiplicity 3.9 3.9 3.9
I/sigma 9.5 23.8 1.0
Rmerge 0.076 0.035 1.007
CC half 0.992 0.994 0.468
Anomalous completeness 84.4 95.8 39.4
Anomalous multiplicity 2.0 2.0 2.0
Cell 32.419 38.146 63.027 97.453 91.523 98.395

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97907

Sweep:

SWEEP1

Files:

/programs/datagrid/413/R17-27_1_#####.mccd

Images:

1 - 360

Beam:

(162.5, 162.5) -> (162.5, 162.39)

Distance:

300.0 -> 300.08

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.9 5.14 1.9
Low resolution limit 24.82 24.82 1.93
Completeness 89.0 94.4 27.7
Multiplicity 3.8 3.8 3.2
I/sigma 13.1 30.6 -1.0
Rmerge 0.041 0.029 -1.011
CC half 0.997 0.996 0.434
Anomalous completeness 81.3 84.1 17.6
Anomalous multiplicity 2.0 2.0 2.0
Cell 32.43 38.15 63.01 97.47 91.5 98.41

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97907

Sweep:

SWEEP1

Files:

/programs/datagrid/413/R17-27_1_#####.mccd

Images:

1 - 360

Beam:

(162.5, 162.5) -> (162.5, 162.37)

Distance:

300.0 -> 299.7

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.88 5.1 1.88
Low resolution limit 34.18 34.18 1.91
Completeness 88.0 94.6 41.1
Multiplicity 3.8 3.8 3.6
I/sigma 12.9 30.6 -0.7
Rmerge 0.041 0.03 -1.34
CC half 0.998 0.996 0.262
Anomalous completeness 80.5 84.6 34.2
Anomalous multiplicity 2.0 2.0 2.0
Cell 32.43 38.15 63.0 97.47 91.5 98.41

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97907

Sweep:

SWEEP1

Files:

/programs/datagrid/413/R17-27_1_#####.mccd

Images:

1 - 360

Beam:

(162.5, 162.5) -> (162.5, 162.47)

Distance:

300.0 -> 300.82

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.79 4.85 1.79
Low resolution limit 34.21 34.22 1.82
Completeness 85.7 97.6 39.1
Multiplicity 3.9 3.9 3.9
I/sigma 10.3 25.9 0.8
Rmerge 0.074 0.031 1.176
CC half 0.985 0.996 0.662
Anomalous completeness 84.6 96.6 38.6
Anomalous multiplicity 2.0 2.0 2.0
Cell 32.469 38.192 63.102 97.436 91.492 98.431

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.