X-Ray Diffraction data from RctB-1-124-L48M, source of 5UBD structure

Data DOI: 10.15785/SBGRID/413 | ID: 413

Publication DOI: 10.1093/nar/gkw1288

5UBD Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Jeruzalmi Laboratory, City College of New York

Release Date: Jan. 6, 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/413

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/413 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/413 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/413 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/413 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 413 ; shasum -c files.sha'

Storage requirements: 12G

Biological Sample:

RctB-1-124-L48M

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

SSRL BL14-1

Data Creation Date:

June 5, 2015

Related Datasets:

None


Cite this Dataset

Orlova, N; Ivashkiv, O; Waldor, MK.; Jeruzalmi, D. 2017. "X-Ray Diffraction data for: RctB-1-124-L48M. PDB Code 5UBD", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/413.

Download Citation

Dataset Description

x-ray diffraction dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Natalia OrlovaData Collector, DepositorThe City College of New York
Olha IvashkivThe City College of New York
David JeruzalmiThe City College of New York
Matthew K. WaldorHarvard Medical School
David JeruzalmiPICity College of New York

Reprocessing Instructions

def.site file is uploaded with the dataset

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97907

Sweep:

SWEEP1

Files:

/programs/datagrid/413/R17-27_1_#####.mccd

Images:

1 - 360

Beam:

(162.5, 162.5) -> (162.5, 162.39)

Distance:

300.0 -> 300.11

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.7 4.61 1.7
Low resolution limit 25.73 25.73 1.73
Completeness 75.3 94.3 25.4
Multiplicity 3.8 3.8 3.9
I/sigma 11.0 29.2 0.5
Rmerge 0.045 0.03 2.08
CC half 0.998 0.997 0.432
Anomalous completeness 68.7 83.7 24.3
Anomalous multiplicity 2.0 2.0 2.0
Cell 32.43 38.15 63.01 97.46 91.49 98.41

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97907

Sweep:

SWEEP1

Files:

/programs/datagrid/413/R17-27_1_#####.mccd

Images:

1 - 360

Beam:

(162.5, 162.5) -> (162.5, 162.37)

Distance:

300.0 -> 299.7

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.68 4.56 1.68
Low resolution limit 31.21 31.21 1.71
Completeness 73.7 93.8 22.9
Multiplicity 3.8 3.8 3.9
I/sigma 11.0 29.5 0.4
Rmerge 0.045 0.029 2.533
CC half 0.998 0.996 0.273
Anomalous completeness 67.1 83.7 22.3
Anomalous multiplicity 2.0 2.0 2.0
Cell 32.43 38.15 63.01 97.46 91.5 98.41

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.