Data DOI: 10.15785/SBGRID/413 | ID: 413
Publication DOI: 10.1093/nar/gkw1288
5UBD Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Jeruzalmi Laboratory, City College of New York
Release Date: Jan. 6, 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/413
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/413 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/413 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/413 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/413 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 413 ; shasum -c files.sha'
Storage requirements: 12G
Biological Sample:
RctB-1-124-L48M
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
SSRL BL14-1
Data Creation Date:
June 5, 2015
Related Datasets:
None
Orlova, N; Ivashkiv, O; Waldor, MK.; Jeruzalmi, D. 2017. "X-Ray Diffraction data for: RctB-1-124-L48M. PDB Code 5UBD", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/413.
x-ray diffraction dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Natalia Orlova | Data Collector, Depositor | The City College of New York |
| Olha Ivashkiv | The City College of New York | |
| David Jeruzalmi | The City College of New York | |
| Matthew K. Waldor | Harvard Medical School | |
| David Jeruzalmi | PI | City College of New York |
def.site file is uploaded with the dataset
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97907
Sweep:
SWEEP1
Files:
/programs/datagrid/413/R17-27_1_#####.mccd
Images:
1 - 360
Beam:
(162.5, 162.5) -> (162.5, 162.54)
Distance:
300.0 -> 299.87
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.78 | 4.83 | 1.78 |
| Low resolution limit | 34.18 | 34.18 | 1.81 |
| Completeness | 85.0 | 97.0 | 40.0 |
| Multiplicity | 3.9 | 3.9 | 3.9 |
| I/sigma | 9.5 | 23.8 | 1.0 |
| Rmerge | 0.076 | 0.035 | 1.007 |
| CC half | 0.992 | 0.994 | 0.468 |
| Anomalous completeness | 84.4 | 95.8 | 39.4 |
| Anomalous multiplicity | 2.0 | 2.0 | 2.0 |
| Cell | 32.419 | 38.146 | 63.027 | 97.453 | 91.523 | 98.395 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97907
Sweep:
SWEEP1
Files:
/programs/datagrid/413/R17-27_1_#####.mccd
Images:
1 - 360
Beam:
(162.5, 162.5) -> (162.5, 162.39)
Distance:
300.0 -> 300.08
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.9 | 5.14 | 1.9 |
| Low resolution limit | 24.82 | 24.82 | 1.93 |
| Completeness | 89.0 | 94.4 | 27.7 |
| Multiplicity | 3.8 | 3.8 | 3.2 |
| I/sigma | 13.1 | 30.6 | -1.0 |
| Rmerge | 0.041 | 0.029 | -1.011 |
| CC half | 0.997 | 0.996 | 0.434 |
| Anomalous completeness | 81.3 | 84.1 | 17.6 |
| Anomalous multiplicity | 2.0 | 2.0 | 2.0 |
| Cell | 32.43 | 38.15 | 63.01 | 97.47 | 91.5 | 98.41 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97907
Sweep:
SWEEP1
Files:
/programs/datagrid/413/R17-27_1_#####.mccd
Images:
1 - 360
Beam:
(162.5, 162.5) -> (162.5, 162.37)
Distance:
300.0 -> 299.7
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.88 | 5.1 | 1.88 |
| Low resolution limit | 34.18 | 34.18 | 1.91 |
| Completeness | 88.0 | 94.6 | 41.1 |
| Multiplicity | 3.8 | 3.8 | 3.6 |
| I/sigma | 12.9 | 30.6 | -0.7 |
| Rmerge | 0.041 | 0.03 | -1.34 |
| CC half | 0.998 | 0.996 | 0.262 |
| Anomalous completeness | 80.5 | 84.6 | 34.2 |
| Anomalous multiplicity | 2.0 | 2.0 | 2.0 |
| Cell | 32.43 | 38.15 | 63.0 | 97.47 | 91.5 | 98.41 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97907
Sweep:
SWEEP1
Files:
/programs/datagrid/413/R17-27_1_#####.mccd
Images:
1 - 360
Beam:
(162.5, 162.5) -> (162.5, 162.47)
Distance:
300.0 -> 300.82
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.79 | 4.85 | 1.79 |
| Low resolution limit | 34.21 | 34.22 | 1.82 |
| Completeness | 85.7 | 97.6 | 39.1 |
| Multiplicity | 3.9 | 3.9 | 3.9 |
| I/sigma | 10.3 | 25.9 | 0.8 |
| Rmerge | 0.074 | 0.031 | 1.176 |
| CC half | 0.985 | 0.996 | 0.662 |
| Anomalous completeness | 84.6 | 96.6 | 38.6 |
| Anomalous multiplicity | 2.0 | 2.0 | 2.0 |
| Cell | 32.469 | 38.192 | 63.102 | 97.436 | 91.492 | 98.431 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
