X-Ray Diffraction data from RctB-1-124, source of 5UBE structure

Data DOI: 10.15785/SBGRID/412 | ID: 412

Publication DOI: 10.1093/nar/gkw1288

5UBE Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Jeruzalmi Laboratory, City College of New York

Release Date: Jan. 6, 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/412

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/412 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/412 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/412 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/412 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 412 ; shasum -c files.sha'

Storage requirements: 544M

Biological Sample:

RctB-1-124

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Brookhaven National Laboratory NSLS X-25

Data Creation Date:

July 8, 2014

Related Datasets:

None


Cite this Dataset

Orlova, N; Ivashkiv, O; Waldor, MK.; Jeruzalmi, D. 2017. "X-Ray Diffraction data for: RctB-1-124. PDB Code 5UBE", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/412.

Download Citation

Dataset Description

x-ray diffraction dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Natalia OrlovaData Collector, DepositorThe City College of New York
Olha IvashkivThe City College of New York
David JeruzalmiThe City College of New York
Matthew K. WaldorHarvard Medical School
David JeruzalmiPICity College of New York

Reprocessing Instructions

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.979

Sweep:

SWEEP1

Files:

/programs/datagrid/412/RN003-e_1_#####.cbf

Images:

1 - 90

Beam:

(224.63, 224.63) -> (224.63, 224.66)

Distance:

400.0 -> 399.02

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.0 5.43 2.0
Low resolution limit 44.87 44.88 2.03
Completeness 84.9 84.1 82.4
Multiplicity 1.5 1.5 1.4
I/sigma 2.9 5.2 1.1
Rmerge 0.135 0.116 0.438
CC half 0.97 0.969 0.611
Anomalous completeness 33.5 41.5 21.1
Anomalous multiplicity 1.1 1.1 1.1
Cell 45.781 51.889 63.389 90.0 101.428 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.979

Sweep:

SWEEP1

Files:

/programs/datagrid/412/RN003-e_1_#####.cbf

Images:

1 - 90

Beam:

(224.63, 224.63) -> (224.63, 224.65)

Distance:

400.0 -> 400.76

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.78 4.83 1.78
Low resolution limit 34.08 34.09 1.81
Completeness 83.6 89.6 43.0
Multiplicity 1.7 1.7 1.4
I/sigma 4.7 8.7 1.0
Rmerge 0.084 0.077 3.991
CC half 0.982 0.974 0.502
Anomalous completeness 40.6 59.2 12.3
Anomalous multiplicity 1.1 1.1 1.1
Cell 45.96 52.11 63.91 90.0 101.36 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.979

Sweep:

SWEEP1

Files:

/programs/datagrid/412/RN003-e_1_#####.cbf

Images:

1 - 90

Beam:

(224.63, 224.63) -> (224.63, 224.66)

Distance:

400.0 -> 400.36

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.78 4.83 1.78
Low resolution limit 40.06 40.08 1.81
Completeness 83.6 89.6 43.0
Multiplicity 1.7 1.7 1.4
I/sigma 4.6 8.5 1.0
Rmerge 0.085 0.079 3.771
CC half 0.977 0.957 0.501
Anomalous completeness 40.6 59.2 12.3
Anomalous multiplicity 1.1 1.1 1.1
Cell 45.96 52.11 63.91 90.0 101.36 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.979

Sweep:

SWEEP1

Files:

/programs/datagrid/412/RN003-e_1_#####.cbf

Images:

1 - 90

Beam:

(224.63, 224.63) -> (224.63, 224.65)

Distance:

400.0 -> 403.0

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.79 4.86 1.79
Low resolution limit 40.16 40.17 1.82
Completeness 80.8 86.7 38.8
Multiplicity 1.6 1.7 1.4
I/sigma 2.5 4.1 0.9
Rmerge 0.156 0.119 0.879
CC half 0.98 0.974 0.299
Anomalous completeness 35.4 52.2 9.9
Anomalous multiplicity 1.1 1.1 1.1
Cell 45.989 52.083 64.253 90.0 100.944 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.