Data DOI: 10.15785/SBGRID/412 | ID: 412
Publication DOI: 10.1093/nar/gkw1288
5UBE Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Jeruzalmi Laboratory, City College of New York
Release Date: 6 Jan 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/412
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/412 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/412 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/412 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/412 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 412 ; shasum -c files.sha'
Storage requirements: 544M
Biological Sample:
RctB-1-124
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Brookhaven National Laboratory NSLS X-25
Data Creation Date:
8 Jul 2014
Related Datasets:
None
Orlova, N; Ivashkiv, O; Waldor, MK.; Jeruzalmi, D. 2017. "X-Ray Diffraction data for: RctB-1-124. PDB Code 5UBE", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/412.
x-ray diffraction dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Natalia Orlova | Data Collector, Depositor | The City College of New York |
| Olha Ivashkiv | The City College of New York | |
| David Jeruzalmi | The City College of New York | |
| Matthew K. Waldor | Harvard Medical School | |
| David Jeruzalmi | PI | City College of New York |
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.979
Sweep:
SWEEP1
Files:
/programs/datagrid/412/RN003-e_1_#####.cbf
Images:
1 - 90
Beam:
(224.63, 224.63) -> (224.63, 224.67)
Distance:
400.0 -> 400.51
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.66 | 4.5 | 1.66 |
| Low resolution limit | 34.08 | 34.09 | 1.69 |
| Completeness | 74.4 | 89.8 | 24.6 |
| Multiplicity | 1.6 | 1.7 | 1.3 |
| I/sigma | 5.1 | 10.6 | 0.5 |
| Rmerge | 0.076 | 0.07 | 6.897 |
| CC half | 0.982 | 0.976 | 0.018 |
| Anomalous completeness | 34.7 | 59.5 | 4.8 |
| Anomalous multiplicity | 1.1 | 1.1 | 1.1 |
| Cell | 45.96 | 52.11 | 63.91 | 90.0 | 101.36 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.979
Sweep:
SWEEP1
Files:
/programs/datagrid/412/RN003-e_1_#####.cbf
Images:
1 - 90
Beam:
(224.63, 224.63) -> (224.63, 224.67)
Distance:
400.0 -> 398.74
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.68 | 4.56 | 1.68 |
| Low resolution limit | 40.06 | 40.08 | 1.71 |
| Completeness | 76.2 | 89.7 | 27.7 |
| Multiplicity | 1.6 | 1.7 | 1.3 |
| I/sigma | 5.4 | 11.2 | 0.6 |
| Rmerge | 0.072 | 0.065 | -19.66 |
| CC half | 0.976 | 0.964 | 0.261 |
| Anomalous completeness | 35.8 | 59.4 | 6.2 |
| Anomalous multiplicity | 1.1 | 1.1 | 1.1 |
| Cell | 45.97 | 52.11 | 63.91 | 90.0 | 101.36 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.979
Sweep:
SWEEP1
Files:
/programs/datagrid/412/RN003-e_1_#####.cbf
Images:
1 - 90
Beam:
(224.63, 224.63) -> (224.63, 224.67)
Distance:
400.0 -> 401.99
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.86 | 5.03 | 1.86 |
| Low resolution limit | 45.17 | 45.19 | 1.89 |
| Completeness | 88.4 | 90.5 | 54.6 |
| Multiplicity | 1.7 | 1.7 | 1.4 |
| I/sigma | 4.3 | 22.3 | 0.2 |
| Rmerge | 0.163 | 0.081 | 1.531 |
| CC half | 0.978 | 0.983 | 0.361 |
| Anomalous completeness | 43.2 | 59.6 | 15.8 |
| Anomalous multiplicity | 1.1 | 1.1 | 1.1 |
| Cell | 46.005 | 52.119 | 64.289 | 90.0 | 100.907 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
